{
    "type": "genome",
    "identifier": "GCA_021372055.1",
    "organism": "Desulfobacteraceae bacterium",
    "title": "Desulfobacteraceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Iowa",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_021372055.1",
        "bioproject": "PRJNA743546",
        "biosample": "SAMN21553928",
        "wgs_master": "JAJFVB000000000.1",
        "refseq_category": "na",
        "taxid": "2049433",
        "species_taxid": "2049433",
        "organism_name": "Desulfobacteraceae bacterium",
        "infraspecific_name": "",
        "isolate": "bin.609",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/01/05",
        "asm_name": "ASM2137205v1",
        "submitter": "University of Iowa",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/372/055/GCA_021372055.1_ASM2137205v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-01-05",
    "dateModified": "2022-01-05",
    "datePublished": "2022-01-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Desulfobacteraceae bacterium"
        ],
        "sample_taxid": [
            "2049433"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Altavista, VA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.331 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.37,
        "contamination": 10.65,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4658853",
        "Number of Sequences": "318",
        "Longest Sequences (bp)": "79496",
        "N50 (bp)": "20595",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.5",
        "Number of CDSs": "3859",
        "Average Protein Length": "314.5",
        "Coding Ratio (%)": "78.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Syntrophobacter fumaroxidans",
                "strain": "strain=MPOB",
                "accession": "GCA_000014965.1",
                "taxid": 119484,
                "species_taxid": 119484,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2419,
                "matched_fragments": 123,
                "total_fragments": 1398,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.37,
            "contamination": 10.65,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_001603845.1",
                "gtdb_species": "s__SbD1 sp001603845",
                "ani": 77.2731,
                "matched_fragments": 146,
                "total_fragments": 1398,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophobacteria;o__Syntrophobacterales;f__Syntrophobacteraceae;g__SbD1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003165235.1",
                "gtdb_species": "s__SbD1 sp003165235",
                "ani": 76.8061,
                "matched_fragments": 147,
                "total_fragments": 1398,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophobacteria;o__Syntrophobacterales;f__Syntrophobacteraceae;g__SbD1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002298995.1",
                "gtdb_species": "s__SbD1 sp002298995",
                "ani": 76.7531,
                "matched_fragments": 127,
                "total_fragments": 1398,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophobacteria;o__Syntrophobacterales;f__Syntrophobacteraceae;g__SbD1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900290365.1",
                "gtdb_species": "s__SbD1 sp900290365",
                "ani": 76.6921,
                "matched_fragments": 103,
                "total_fragments": 1398,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophobacteria;o__Syntrophobacterales;f__Syntrophobacteraceae;g__SbD1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002298165.1",
                "gtdb_species": "s__SbD1 sp002298165",
                "ani": 76.3979,
                "matched_fragments": 109,
                "total_fragments": 1398,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophobacteria;o__Syntrophobacterales;f__Syntrophobacteraceae;g__SbD1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000014965.1",
                "gtdb_species": "s__Syntrophobacter fumaroxidans",
                "ani": 76.2706,
                "matched_fragments": 121,
                "total_fragments": 1398,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophobacteria;o__Syntrophobacterales;f__Syntrophobacteraceae;g__Syntrophobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013314815.1",
                "gtdb_species": "s__JABUEY01 sp013314815",
                "ani": 76.2627,
                "matched_fragments": 84,
                "total_fragments": 1398,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophobacteria;o__Syntrophobacterales;f__Syntrophobacteraceae;g__JABUEY01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012517315.1",
                "gtdb_species": "s__JAAYUJ01 sp012517315",
                "ani": 76.1358,
                "matched_fragments": 67,
                "total_fragments": 1398,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophobacteria;o__Syntrophobacterales;f__Syntrophobacteraceae;g__JAAYUJ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.042,
        "cell_length": 0.364,
        "doubling_h": 1.305,
        "growth_tmp": 28.037,
        "optimum_tmp": 30.588,
        "optimum_ph": 7.267,
        "genome_size": 5675869.625,
        "gc_content": 51.573,
        "coding_genes": 4621.583,
        "rRNA16S_genes": 3.75,
        "tRNA_genes": 52.25,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.619,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.695,
        "coccus_cell_shape": 0.043,
        "filament_cell_shape": 0.043,
        "coccobacillus_cell_shape": 0.086,
        "vibrio_cell_shape": 0.13,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Syntrophobacteria",
        "o__Syntrophobacterales",
        "f__Syntrophobacteraceae",
        "g__SbD1",
        "s__SbD1 sp021372055"
    ],
    "_genome_taxon": [
        "Desulfobacteraceae",
        "bacterium",
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Syntrophobacteria",
        "o__Syntrophobacterales",
        "f__Syntrophobacteraceae",
        "g__SbD1",
        "s__SbD1 sp021372055",
        "Bacteria",
        "Desulfobacterota",
        "Syntrophobacteria",
        "Syntrophobacterales",
        "Syntrophobacteraceae",
        "SbD1",
        "SbD1",
        "sp021372055"
    ],
    "_meo": [
        {
            "id": "MEO_0000035",
            "label": "waste water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}