{
    "type": "genome",
    "identifier": "GCA_021620585.1",
    "organism": "Clostridium sp.",
    "title": "Clostridium sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Stanford University School of Medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_021620585.1",
        "bioproject": "PRJNA678454",
        "biosample": "SAMN23482597",
        "wgs_master": "JAJVWQ000000000.1",
        "refseq_category": "na",
        "taxid": "1506",
        "species_taxid": "1506",
        "organism_name": "Clostridium sp.",
        "infraspecific_name": "",
        "isolate": "A47_27.fa",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/01/26",
        "asm_name": "ASM2162058v1",
        "submitter": "Stanford University School of Medicine",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/620/585/GCA_021620585.1_ASM2162058v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-01-26",
    "dateModified": "2022-01-26",
    "datePublished": "2022-01-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridium sp."
        ],
        "sample_taxid": [
            "1506"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Africa: Soweto, Gauteng"
        ],
        "sample_host_location_id": [],
        "data_size": "0.676 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 88.87,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2343004",
        "Number of Sequences": "454",
        "Longest Sequences (bp)": "34648",
        "N50 (bp)": "6528",
        "Gap Ratio (%)": "0.022621",
        "GCcontent (%)": "46.9",
        "Number of CDSs": "1855",
        "Average Protein Length": "313.3",
        "Coding Ratio (%)": "74.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "17",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Eisenbergiella massiliensis",
                "strain": "strain=AT11",
                "accession": "GCA_900243045.1",
                "taxid": 1720294,
                "species_taxid": 1720294,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9535,
                "matched_fragments": 73,
                "total_fragments": 546,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eisenbergiella tayi",
                "strain": "strain=DSM 26961",
                "accession": "GCA_001881565.1",
                "taxid": 1432052,
                "species_taxid": 1432052,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9142,
                "matched_fragments": 68,
                "total_fragments": 546,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eisenbergiella porci",
                "strain": "strain=WCA-389-WT-23B",
                "accession": "GCA_009696275.1",
                "taxid": 2652274,
                "species_taxid": 2652274,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7404,
                "matched_fragments": 67,
                "total_fragments": 546,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 88.87,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_000434615.1",
                "gtdb_species": "s__CAG-510 sp000434615",
                "ani": 98.5176,
                "matched_fragments": 506,
                "total_fragments": 546,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-510",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.10",
                "min_intra_species_ani": "97.86",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002432425.1",
                "gtdb_species": "s__CAG-510 sp002432425",
                "ani": 93.3014,
                "matched_fragments": 481,
                "total_fragments": 546,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-510",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.90",
                "min_intra_species_ani": "96.14",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_900551115.1",
                "gtdb_species": "s__CAG-510 sp900551115",
                "ani": 78.2432,
                "matched_fragments": 157,
                "total_fragments": 546,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-510",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017482205.1",
                "gtdb_species": "s__CAG-510 sp017482205",
                "ani": 78.1421,
                "matched_fragments": 118,
                "total_fragments": 546,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-510",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.99",
                "min_intra_species_ani": "98.99",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900550475.1",
                "gtdb_species": "s__CAG-510 sp900550475",
                "ani": 77.7879,
                "matched_fragments": 133,
                "total_fragments": 546,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-510",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.15",
                "min_intra_species_ani": "99.15",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_910577105.1",
                "gtdb_species": "s__CAG-510 sp910577105",
                "ani": 77.5812,
                "matched_fragments": 91,
                "total_fragments": 546,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-510",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003584705.1",
                "gtdb_species": "s__Acetatifactor sp900066565",
                "ani": 77.5484,
                "matched_fragments": 108,
                "total_fragments": 546,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.01",
                "min_intra_species_ani": "97.56",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 26,
                "status": "-"
            },
            {
                "accession": "GCA_910577015.1",
                "gtdb_species": "s__CAG-510 sp910577015",
                "ani": 77.3413,
                "matched_fragments": 107,
                "total_fragments": 546,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-510",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017465845.1",
                "gtdb_species": "s__Acetatifactor sp017465845",
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                "matched_fragments": 59,
                "total_fragments": 546,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900554205.1",
                "gtdb_species": "s__Acetatifactor sp900554205",
                "ani": 77.0233,
                "matched_fragments": 73,
                "total_fragments": 546,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.93",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016303085.1",
                "gtdb_species": "s__Acetatifactor sp016303085",
                "ani": 76.743,
                "matched_fragments": 62,
                "total_fragments": 546,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014803415.1",
                "gtdb_species": "s__CAG-95 sp014803415",
                "ani": 76.7017,
                "matched_fragments": 56,
                "total_fragments": 546,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-95",
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                "mean_intra_species_ani": "97.80",
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                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_910577035.1",
                "gtdb_species": "s__Acetatifactor sp910577035",
                "ani": 76.618,
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                "total_fragments": 546,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_003481005.1",
                "gtdb_species": "s__Eisenbergiella sp900066775",
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                "total_fragments": 546,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eisenbergiella",
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                "mean_intra_species_ani": "97.95",
                "min_intra_species_ani": "96.96",
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                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 15,
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            },
            {
                "accession": "GCA_900542015.1",
                "gtdb_species": "s__UBA2882 sp900542015",
                "ani": 76.2793,
                "matched_fragments": 50,
                "total_fragments": 546,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA2882",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.84",
                "min_intra_species_ani": "99.68",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.16,
        "cell_length": 0.434,
        "doubling_h": 0.353,
        "growth_tmp": 33.457,
        "optimum_tmp": 35.173,
        "optimum_ph": 6.947,
        "genome_size": 4165901.003,
        "gc_content": 29.49,
        "coding_genes": 3796.985,
        "rRNA16S_genes": 9.374,
        "tRNA_genes": 78.312,
        "gram_stain": 0.945,
        "sporulation": 0.967,
        "motility": 0.92,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.944,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__CAG-510",
        "s__CAG-510 sp000434615"
    ],
    "_genome_taxon": [
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        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__CAG-510",
        "s__CAG-510 sp000434615",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "CAG-510",
        "CAG-510",
        "sp000434615"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}