{
    "type": "genome",
    "identifier": "GCA_021621045.1",
    "organism": "Bacteroides sp.",
    "title": "Bacteroides sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Stanford University School of Medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_021621045.1",
        "bioproject": "PRJNA678454",
        "biosample": "SAMN23482573",
        "wgs_master": "JAJVVS000000000.1",
        "refseq_category": "na",
        "taxid": "29523",
        "species_taxid": "29523",
        "organism_name": "Bacteroides sp.",
        "infraspecific_name": "",
        "isolate": "A41_3.fa",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/01/26",
        "asm_name": "ASM2162104v1",
        "submitter": "Stanford University School of Medicine",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/621/045/GCA_021621045.1_ASM2162104v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-01-26",
    "dateModified": "2022-01-26",
    "datePublished": "2022-01-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacteroides sp."
        ],
        "sample_taxid": [
            "29523"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Africa: Soweto, Gauteng"
        ],
        "sample_host_location_id": [],
        "data_size": "0.939 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 83.33,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3258692",
        "Number of Sequences": "256",
        "Longest Sequences (bp)": "75479",
        "N50 (bp)": "19699",
        "Gap Ratio (%)": "0.015957",
        "GCcontent (%)": "48.0",
        "Number of CDSs": "2511",
        "Average Protein Length": "370.3",
        "Coding Ratio (%)": "85.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "26",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 83.33,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_000435075.1",
                "gtdb_species": "s__Cryptobacteroides sp000435075",
                "ani": 96.4142,
                "matched_fragments": 680,
                "total_fragments": 961,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.30",
                "min_intra_species_ani": "97.06",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_000434935.1",
                "gtdb_species": "s__Cryptobacteroides sp000434935",
                "ani": 82.1489,
                "matched_fragments": 373,
                "total_fragments": 961,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.20",
                "min_intra_species_ani": "96.88",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_000432515.1",
                "gtdb_species": "s__Cryptobacteroides sp000432515",
                "ani": 81.2387,
                "matched_fragments": 329,
                "total_fragments": 961,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.23",
                "min_intra_species_ani": "97.18",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900546925.1",
                "gtdb_species": "s__Cryptobacteroides sp900546925",
                "ani": 80.9477,
                "matched_fragments": 247,
                "total_fragments": 961,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.81",
                "min_intra_species_ani": "98.70",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_000431015.1",
                "gtdb_species": "s__Cryptobacteroides sp000431015",
                "ani": 79.2243,
                "matched_fragments": 82,
                "total_fragments": 961,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.39",
                "min_intra_species_ani": "98.13",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_004552615.1",
                "gtdb_species": "s__Cryptobacteroides sp004552615",
                "ani": 77.6664,
                "matched_fragments": 135,
                "total_fragments": 961,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.38",
                "min_intra_species_ani": "98.38",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900769145.1",
                "gtdb_species": "s__Cryptobacteroides sp900769145",
                "ani": 77.4543,
                "matched_fragments": 146,
                "total_fragments": 961,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900167925.1",
                "gtdb_species": "s__Cryptobacteroides sp900167925",
                "ani": 77.162,
                "matched_fragments": 76,
                "total_fragments": 961,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Cryptobacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.91",
                "min_intra_species_ani": "97.12",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 9,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.136,
        "cell_length": 0.217,
        "doubling_h": -0.095,
        "growth_tmp": 36.666,
        "optimum_tmp": 36.026,
        "optimum_ph": 6.997,
        "genome_size": 4818468.536,
        "gc_content": 43.414,
        "coding_genes": 3969.717,
        "rRNA16S_genes": 5.5,
        "tRNA_genes": 71.066,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__UBA932",
        "g__Cryptobacteroides",
        "s__Cryptobacteroides sp000435075"
    ],
    "_genome_taxon": [
        "Bacteroides",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__UBA932",
        "g__Cryptobacteroides",
        "s__Cryptobacteroides sp000435075",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "UBA932",
        "Cryptobacteroides",
        "Cryptobacteroides",
        "sp000435075"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}