{
    "type": "genome",
    "identifier": "GCA_021621085.1",
    "organism": "Prevotellaceae bacterium",
    "title": "Prevotellaceae bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Stanford University School of Medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_021621085.1",
        "bioproject": "PRJNA678454",
        "biosample": "SAMN23482571",
        "wgs_master": "JAJVVQ000000000.1",
        "refseq_category": "na",
        "taxid": "2049047",
        "species_taxid": "2049047",
        "organism_name": "Prevotellaceae bacterium",
        "infraspecific_name": "",
        "isolate": "A41_27.fa",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/01/26",
        "asm_name": "ASM2162108v1",
        "submitter": "Stanford University School of Medicine",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/621/085/GCA_021621085.1_ASM2162108v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-01-26",
    "dateModified": "2022-01-26",
    "datePublished": "2022-01-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Prevotellaceae bacterium"
        ],
        "sample_taxid": [
            "2049047"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Africa: Soweto, Gauteng"
        ],
        "sample_host_location_id": [],
        "data_size": "0.679 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 80.38,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2330882",
        "Number of Sequences": "618",
        "Longest Sequences (bp)": "26767",
        "N50 (bp)": "4350",
        "Gap Ratio (%)": "0.029174",
        "GCcontent (%)": "50.3",
        "Number of CDSs": "1283",
        "Average Protein Length": "348.8",
        "Coding Ratio (%)": "57.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "21",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Prevotellamassilia timonensis",
                "strain": "strain=Marseille-P2831",
                "accession": "GCA_900106785.1",
                "taxid": 1852370,
                "species_taxid": 1852370,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.7018,
                "matched_fragments": 431,
                "total_fragments": 452,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 80.38,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900106785.1",
                "gtdb_species": "s__Alloprevotella timonensis",
                "ani": 96.7018,
                "matched_fragments": 431,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.61",
                "min_intra_species_ani": "96.80",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900540885.1",
                "gtdb_species": "s__Alloprevotella sp900540885",
                "ani": 80.025,
                "matched_fragments": 131,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.94",
                "min_intra_species_ani": "97.84",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900541575.1",
                "gtdb_species": "s__Alloprevotella sp900541575",
                "ani": 79.7598,
                "matched_fragments": 107,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900542795.1",
                "gtdb_species": "s__Alloprevotella sp900542795",
                "ani": 79.0196,
                "matched_fragments": 110,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.89",
                "min_intra_species_ani": "97.87",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900546605.1",
                "gtdb_species": "s__Alloprevotella sp900546605",
                "ani": 78.601,
                "matched_fragments": 113,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.64",
                "min_intra_species_ani": "98.64",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900543155.1",
                "gtdb_species": "s__Alloprevotella sp900543155",
                "ani": 78.5816,
                "matched_fragments": 120,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.25",
                "min_intra_species_ani": "98.25",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_000437675.1",
                "gtdb_species": "s__Alloprevotella sp000437675",
                "ani": 78.0992,
                "matched_fragments": 98,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.30",
                "min_intra_species_ani": "98.80",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002431845.1",
                "gtdb_species": "s__Alloprevotella sp002431845",
                "ani": 77.7236,
                "matched_fragments": 92,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004557185.1",
                "gtdb_species": "s__Alloprevotella sp004557185",
                "ani": 77.6727,
                "matched_fragments": 109,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.58",
                "min_intra_species_ani": "98.39",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_004552195.1",
                "gtdb_species": "s__Alloprevotella sp004552195",
                "ani": 77.2603,
                "matched_fragments": 82,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900539625.1",
                "gtdb_species": "s__Alloprevotella sp900539625",
                "ani": 77.2498,
                "matched_fragments": 61,
                "total_fragments": 452,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Alloprevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.08",
                "min_intra_species_ani": "97.36",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.225,
        "cell_length": 0.118,
        "doubling_h": null,
        "growth_tmp": 36.775,
        "optimum_tmp": 35.358,
        "optimum_ph": 7.1,
        "genome_size": 3057162.545,
        "gc_content": 45.298,
        "coding_genes": 2508.172,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 50.875,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.976,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.023,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Alloprevotella",
        "s__Alloprevotella timonensis"
    ],
    "_genome_taxon": [
        "Prevotellaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Alloprevotella",
        "s__Alloprevotella timonensis",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "Alloprevotella",
        "Alloprevotella",
        "timonensis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}