{
    "type": "genome",
    "identifier": "GCA_021621865.1",
    "organism": "Phocaeicola plebeius",
    "title": "Phocaeicola plebeius",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Stanford University School of Medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_021621865.1",
        "bioproject": "PRJNA678454",
        "biosample": "SAMN23482531",
        "wgs_master": "JAJVUC000000000.1",
        "refseq_category": "na",
        "taxid": "310297",
        "species_taxid": "310297",
        "organism_name": "Phocaeicola plebeius",
        "infraspecific_name": "",
        "isolate": "A28_maxbin.002_sub.fa",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/01/26",
        "asm_name": "ASM2162186v1",
        "submitter": "Stanford University School of Medicine",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/621/865/GCA_021621865.1_ASM2162186v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-01-26",
    "dateModified": "2022-01-26",
    "datePublished": "2022-01-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Phocaeicola plebeius"
        ],
        "sample_taxid": [
            "310297"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Africa: Soweto, Gauteng"
        ],
        "sample_host_location_id": [],
        "data_size": "1.067 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 75.82,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3669037",
        "Number of Sequences": "570",
        "Longest Sequences (bp)": "51168",
        "N50 (bp)": "12209",
        "Gap Ratio (%)": "0.020986",
        "GCcontent (%)": "45.5",
        "Number of CDSs": "2714",
        "Average Protein Length": "355.7",
        "Coding Ratio (%)": "78.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "28",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "accession": "GCA_000187895.1",
                "taxid": 310297,
                "species_taxid": 310297,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 94.1814,
                "matched_fragments": 699,
                "total_fragments": 939,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola faecicola",
                "strain": "strain=AGMB03916",
                "accession": "GCA_013618865.1",
                "taxid": 2739389,
                "species_taxid": 2739389,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9787,
                "matched_fragments": 267,
                "total_fragments": 939,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola barnesiae",
                "strain": "strain=DSM 18169",
                "accession": "GCA_000374585.1",
                "taxid": 376804,
                "species_taxid": 376804,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3884,
                "matched_fragments": 294,
                "total_fragments": 939,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola coprophilus",
                "strain": "strain=DSM 18228",
                "accession": "GCA_000157915.1",
                "taxid": 387090,
                "species_taxid": 387090,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3439,
                "matched_fragments": 291,
                "total_fragments": 939,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola coprophilus",
                "strain": "strain=JCM 13818",
                "accession": "GCA_001315785.1",
                "taxid": 387090,
                "species_taxid": 387090,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3293,
                "matched_fragments": 289,
                "total_fragments": 939,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola barnesiae",
                "strain": "strain=JCM 13652",
                "accession": "GCA_000613645.1",
                "taxid": 376804,
                "species_taxid": 376804,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2592,
                "matched_fragments": 295,
                "total_fragments": 939,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola faecium",
                "strain": "strain=Sa1YUN3",
                "accession": "GCA_014837055.1",
                "taxid": 2762213,
                "species_taxid": 2762213,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0366,
                "matched_fragments": 198,
                "total_fragments": 939,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola salanitronis",
                "strain": "strain=DSM 18170",
                "accession": "GCA_000190575.1",
                "taxid": 376805,
                "species_taxid": 376805,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.961,
                "matched_fragments": 178,
                "total_fragments": 939,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola intestinalis",
                "strain": "strain=Sa1CVN1",
                "accession": "GCA_014837065.1",
                "taxid": 2762212,
                "species_taxid": 2762212,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8469,
                "matched_fragments": 184,
                "total_fragments": 939,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides stercorirosoris",
                "strain": "strain=JCM 17103",
                "accession": "GCA_000614165.1",
                "taxid": 871324,
                "species_taxid": 871324,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8019,
                "matched_fragments": 111,
                "total_fragments": 939,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides caecimuris",
                "strain": "strain=I48",
                "accession": "GCA_023277905.1",
                "taxid": 1796613,
                "species_taxid": 1796613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1818,
                "matched_fragments": 113,
                "total_fragments": 939,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides eggerthii",
                "strain": "strain=DSM 20697",
                "accession": "GCA_025146565.1",
                "taxid": 28111,
                "species_taxid": 28111,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0574,
                "matched_fragments": 98,
                "total_fragments": 939,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 75.82,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003437535.1",
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                "matched_fragments": 739,
                "total_fragments": 939,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.72",
                "min_intra_species_ani": "95.85",
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            },
            {
                "accession": "GCF_000187895.1",
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                "matched_fragments": 699,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "96.70",
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                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_016900355.1",
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                "matched_fragments": 571,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "95.04",
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                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCA_902362595.1",
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                "matched_fragments": 583,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
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                "min_intra_species_ani": "96.40",
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                "status": "-"
            },
            {
                "accession": "GCF_900128455.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
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            },
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                "accession": "GCA_900551445.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
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            {
                "accession": "GCA_900552075.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": -0.523,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
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        "genome_size": 2530631.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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        "spiral_cell_shape": 0.0
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    "_gtdb_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Phocaeicola",
        "s__Phocaeicola plebeius_A"
    ],
    "_genome_taxon": [
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        "plebeius",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Phocaeicola",
        "s__Phocaeicola plebeius_A",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "Phocaeicola",
        "Phocaeicola",
        "plebeius",
        "A"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}