{ "type": "genome", "identifier": "GCA_021621995.1", "organism": "Prevotella sp.", "title": "Prevotella sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Stanford University School of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_021621995.1", "bioproject": "PRJNA678454", "biosample": "SAMN23482524", "wgs_master": "JAJVTV000000000.1", "refseq_category": "na", "taxid": "59823", "species_taxid": "59823", "organism_name": "Prevotella sp.", "infraspecific_name": "", "isolate": "A27_bin.2.fa", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/26", "asm_name": "ASM2162199v1", "submitter": "Stanford University School of Medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/621/995/GCA_021621995.1_ASM2162199v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-26", "dateModified": "2022-01-26", "datePublished": "2022-01-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella sp." ], "sample_taxid": [ "59823" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Africa: Soweto, Gauteng" ], "sample_host_location_id": [], "data_size": "0.931 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3252171", "Number of Sequences": "87", "Longest Sequences (bp)": "270922", "N50 (bp)": "55090", "Gap Ratio (%)": "0.037821", "GCcontent (%)": "46.3", "Number of CDSs": "2562", "Average Protein Length": "360.7", "Coding Ratio (%)": "85.2", "Number of rRNAs": "0", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella hominis", "strain": "strain=BCRC 81118", "accession": "GCA_004535825.1", "taxid": 2518605, "species_taxid": 2518605, "relation_to_type": "type", "validated": true, "ani": 83.903, "matched_fragments": 485, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_000157935.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 81.8024, "matched_fragments": 468, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_009495405.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 81.793, "matched_fragments": 446, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_025151535.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 81.7706, "matched_fragments": 455, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella stercorea", "strain": "strain=DSM 18206", "accession": "GCA_000235885.1", "taxid": 363265, "species_taxid": 363265, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1097, "matched_fragments": 180, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella scopos", "strain": "strain=W2052", "accession": "GCA_001683355.1", "taxid": 589437, "species_taxid": 589437, "relation_to_type": "type", "validated": true, "ani": 78.6366, "matched_fragments": 98, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella scopos", "strain": "strain=W2052", "accession": "GCA_018127785.1", "taxid": 589437, "species_taxid": 589437, "relation_to_type": "type", "validated": true, "ani": 78.4928, "matched_fragments": 103, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella faecis", "strain": "strain=CLA-AA-H145", "accession": "GCA_018789675.1", "taxid": 2841596, "species_taxid": 2841596, "relation_to_type": "type", "validated": true, "ani": 78.0652, "matched_fragments": 161, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella multiformis", "strain": "strain=DSM 16608", "accession": "GCA_000191065.1", "taxid": 282402, "species_taxid": 282402, "relation_to_type": "type", "validated": true, "ani": 77.671, "matched_fragments": 109, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella illustrans", "strain": "strain=A2931", "accession": "GCA_017426725.1", "taxid": 2800387, "species_taxid": 2800387, "relation_to_type": "type", "validated": true, "ani": 77.2912, "matched_fragments": 105, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lacticifex", "strain": "strain=R5019", "accession": "GCA_019973375.1", "taxid": 2854755, "species_taxid": 2854755, "relation_to_type": "type", "validated": true, "ani": 77.2557, "matched_fragments": 112, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella ruminicola", "strain": "strain=ATCC 19189", "accession": "GCA_900108375.1", "taxid": 839, "species_taxid": 839, "relation_to_type": "type", "validated": true, "ani": 77.2319, "matched_fragments": 121, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella buccae", "strain": "strain=ATCC 33574", "accession": "GCA_000184945.1", "taxid": 28126, "species_taxid": 28126, "relation_to_type": "type", "validated": true, "ani": 77.0887, "matched_fragments": 171, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella falsenii", "strain": "strain=JCM 15124", "accession": "GCA_000613945.1", "taxid": 515414, "species_taxid": 515414, "relation_to_type": "type", "validated": true, "ani": 77.0745, "matched_fragments": 72, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella dentalis", "strain": "strain=DSM 3688", "accession": "GCA_000242335.3", "taxid": 52227, "species_taxid": 52227, "relation_to_type": "type", "validated": true, "ani": 76.9378, "matched_fragments": 116, "total_fragments": 1044, "ani_threshold": 95, "status": "below_threshold" } ], 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"min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002439605.1", "gtdb_species": "s__Prevotella sp002439605", "ani": 84.8825, "matched_fragments": 544, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.57", "min_intra_species_ani": "99.57", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004535825.1", "gtdb_species": "s__Prevotella hominis", "ani": 83.909, "matched_fragments": 484, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.52", "min_intra_species_ani": "95.16", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.66", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCA_019249655.1", "gtdb_species": "s__Prevotella sp900767615", "ani": 82.3193, "matched_fragments": 497, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.47", "min_intra_species_ani": "95.77", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.75", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_015074785.1", "gtdb_species": "s__Prevotella sp015074785", "ani": 82.2418, "matched_fragments": 490, "total_fragments": 1044, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.6733, "mean_intra_species_ani": "96.50", "min_intra_species_ani": "95.88", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.71", "num_clustered_genomes": 45, "status": "-" }, { "accession": 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