{ "type": "genome", "identifier": "GCA_021737665.1", "organism": "Desulfarculaceae bacterium", "title": "Desulfarculaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Evolutionary Genomics Group", "publication": [ {} ], "properties": { "assembly_accession": "GCA_021737665.1", "bioproject": "PRJNA639779", "biosample": "SAMN21020432", "wgs_master": "JAIPDN000000000.1", "refseq_category": "na", "taxid": "2528248", "species_taxid": "2528248", "organism_name": "Desulfarculaceae bacterium", "infraspecific_name": "", "isolate": "Tobar13.5m-G24", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/31", "asm_name": "ASM2173766v1", "submitter": "Evolutionary Genomics Group", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/737/665/GCA_021737665.1_ASM2173766v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-31", "dateModified": "2022-01-31", "datePublished": "2022-01-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfarculaceae bacterium" ], "sample_taxid": [ "2528248" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Laguna del Tobar" ], "sample_host_location_id": [], "data_size": "1.111 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 71.88, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4022296", "Number of Sequences": "87", "Longest Sequences (bp)": "225341", "N50 (bp)": "85831", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.3", "Number of CDSs": "3768", "Average Protein Length": "313.7", "Coding Ratio (%)": "88.2", "Number of rRNAs": "1", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfarculus baarsii", "strain": "strain=DSM 2075", "accession": "GCA_000143965.1", "taxid": 453230, "species_taxid": 453230, "relation_to_type": "type", "validated": true, "ani": 78.0541, "matched_fragments": 420, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dethiosulfatarculus sandiegensis", "strain": "strain=SPR", "accession": "GCA_000931935.2", "taxid": 1429043, "species_taxid": 1429043, "relation_to_type": "type", "validated": true, "ani": 76.5049, "matched_fragments": 162, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupidesulfovibrio liaohensis", "strain": "strain=XJ01", "accession": "GCA_011682075.1", "taxid": 2604158, "species_taxid": 2604158, "relation_to_type": "type", "validated": true, "ani": 76.1144, "matched_fragments": 93, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dissulfurirhabdus thermomarina", "strain": "strain=SH388", "accession": "GCA_012979235.1", "taxid": 1765737, "species_taxid": 1765737, "relation_to_type": "type", "validated": true, "ani": 76.0636, "matched_fragments": 109, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupidesulfovibrio termitidis", "strain": "strain=HI1", "accession": "GCA_000504305.1", "taxid": 42252, "species_taxid": 42252, "relation_to_type": "type", "validated": true, "ani": 76.0301, "matched_fragments": 114, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dissulfurirhabdus thermomarina", "strain": "strain=DSM 100025", "accession": "GCA_010499435.1", "taxid": 1765737, "species_taxid": 1765737, "relation_to_type": "type", "validated": true, "ani": 75.9928, "matched_fragments": 97, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfacinum hydrothermale", "strain": "strain=DSM 13146", "accession": "GCA_900176285.1", "taxid": 109258, "species_taxid": 109258, "relation_to_type": "type", "validated": true, "ani": 75.9101, "matched_fragments": 88, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelobacter propionicus", "strain": "strain=DSM 2379", "accession": "GCA_000015045.1", "taxid": 29543, "species_taxid": 29543, "relation_to_type": "type", "validated": true, "ani": 75.8813, "matched_fragments": 55, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfacinum infernum", "strain": "strain=DSM 9756", "accession": "GCA_900129305.1", "taxid": 35837, "species_taxid": 35837, "relation_to_type": "type", "validated": true, "ani": 75.8337, "matched_fragments": 124, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paucidesulfovibrio longus", "strain": "strain=DSM 6739", "accession": "GCA_000420485.1", "taxid": 889, "species_taxid": 889, "relation_to_type": "type", "validated": true, "ani": 75.8148, "matched_fragments": 98, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deferrisoma camini", "strain": "strain=S3R1", "accession": "GCA_000526155.1", "taxid": 1035120, "species_taxid": 1035120, "relation_to_type": "type", "validated": true, "ani": 75.7913, "matched_fragments": 199, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio sulfidiphilus", "strain": "strain=HL-EbGR7", "accession": "GCA_000021985.1", "taxid": 1033854, "species_taxid": 1033854, "relation_to_type": "type", "validated": true, "ani": 75.4496, "matched_fragments": 104, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas broegbernensis", "strain": "strain=DSM 12573", "accession": "GCA_014202435.1", "taxid": 83619, "species_taxid": 83619, "relation_to_type": "type", "validated": true, "ani": 75.29, "matched_fragments": 98, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas broegbernensis", "strain": "strain=DSM 12573", "accession": "GCA_010093165.1", "taxid": 83619, "species_taxid": 83619, "relation_to_type": "type", "validated": true, "ani": 75.2811, "matched_fragments": 99, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurivermis fontis", "strain": "strain=JG42", "accession": "GCA_004001245.1", "taxid": 1972068, "species_taxid": 1972068, "relation_to_type": "type", "validated": true, "ani": 75.2701, "matched_fragments": 55, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalocapsa marina", "strain": "strain=DSM 19078", "accession": "GCA_008632335.1", "taxid": 424902, "species_taxid": 424902, "relation_to_type": "type", "validated": true, "ani": 75.2429, "matched_fragments": 65, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella hybrida", "strain": "strain=DSM 14722", "accession": "GCA_020103775.1", "taxid": 394097, "species_taxid": 394097, "relation_to_type": "type", "validated": true, "ani": 74.9797, "matched_fragments": 147, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter soli", "strain": "strain=Ji-3-8", "accession": "GCA_011045195.1", "taxid": 2708539, "species_taxid": 2708539, "relation_to_type": "type", "validated": true, "ani": 74.8821, "matched_fragments": 105, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inhella proteolytica", "strain": "strain=1Y17", "accession": "GCA_016093275.1", "taxid": 2795029, "species_taxid": 2795029, "relation_to_type": "type", "validated": true, "ani": 74.8553, "matched_fragments": 107, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter rhizosphaerae", "strain": "strain=CGMCC 1.15915", "accession": "GCA_014645055.1", "taxid": 2010972, "species_taxid": 2010972, "relation_to_type": "type", "validated": true, "ani": 74.8032, "matched_fragments": 116, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter rhizosphaerae", "strain": "strain=KCTC 52515", "accession": "GCA_010977555.1", "taxid": 2010972, "species_taxid": 2010972, "relation_to_type": "type", "validated": true, "ani": 74.7744, "matched_fragments": 118, "total_fragments": 1298, "ani_threshold": 95, "status": "below_threshold" } ], 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