{ "type": "genome", "identifier": "GCA_021741495.1", "organism": "Reyranella sp.", "title": "Reyranella sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Evolutionary Genomics Group", "publication": [ {} ], "properties": { "assembly_accession": "GCA_021741495.1", "bioproject": "PRJNA639779", "biosample": "SAMN21020318", "wgs_master": "JAIOXT000000000.1", "refseq_category": "na", "taxid": "1929291", "species_taxid": "1929291", "organism_name": "Reyranella sp.", "infraspecific_name": "", "isolate": "Tobar12.5m-G11", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/31", "asm_name": "ASM2174149v1", "submitter": "Evolutionary Genomics Group", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/741/495/GCA_021741495.1_ASM2174149v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-31", "dateModified": "2022-01-31", "datePublished": "2022-01-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Reyranella sp." ], "sample_taxid": [ "1929291" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Laguna del Tobar" ], "sample_host_location_id": [], "data_size": "0.902 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 12.5, "strain_heterogeneity": 16.67, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3240929", "Number of Sequences": "123", "Longest Sequences (bp)": "147915", "N50 (bp)": "46626", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.0", "Number of CDSs": "3078", "Average Protein Length": "312.3", "Coding Ratio (%)": "89.0", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Reyranella aquatilis", "strain": "strain=KCTC 52223", "accession": "GCA_020880995.1", "taxid": 2035356, "species_taxid": 2035356, "relation_to_type": "type", "validated": true, "ani": 81.669, "matched_fragments": 644, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Reyranella soli", "strain": "strain=NBRC 108950", "accession": "GCA_007992495.1", "taxid": 1230389, "species_taxid": 1230389, "relation_to_type": "type", "validated": true, "ani": 81.548, "matched_fragments": 667, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Reyranella massiliensis", "strain": "strain=521", "accession": "GCA_000312425.1", "taxid": 445220, "species_taxid": 445220, "relation_to_type": "type", "validated": true, "ani": 81.283, "matched_fragments": 604, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vineibacter terrae", "strain": "strain=CC-CFT640", "accession": "GCA_008039615.1", "taxid": 2586908, "species_taxid": 2586908, "relation_to_type": "type", "validated": true, "ani": 77.9223, "matched_fragments": 408, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidongia dinghuensis", "strain": "strain=CGMCC 1.15725", "accession": "GCA_014643535.1", "taxid": 1867774, "species_taxid": 1867774, "relation_to_type": "type", "validated": true, "ani": 76.4626, "matched_fragments": 181, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.3322, "matched_fragments": 213, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=USBA 355", "accession": "GCA_900177295.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.3304, "matched_fragments": 215, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferruginivarius sediminum", "strain": "strain=WD2A32", "accession": "GCA_003344765.1", "taxid": 2661937, "species_taxid": 2661937, "relation_to_type": "type", "validated": true, "ani": 75.9671, "matched_fragments": 80, "total_fragments": 1017, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 12.5, "strain_heterogeneity": 16.67 }, "gtdb_result": [ { "accession": "GCA_004296935.1", "gtdb_species": "s__Reyranella sp004296935", "ani": 84.7493, "matched_fragments": 723, "total_fragments": 1017, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001767945.1", "gtdb_species": "s__Reyranella sp001767945", "ani": 84.2442, "matched_fragments": 589, "total_fragments": 1017, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_010032545.1", "gtdb_species": "s__Reyranella sp010032545", "ani": 83.3886, "matched_fragments": 568, "total_fragments": 1017, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004296815.1", "gtdb_species": "s__Reyranella sp004296815", "ani": 82.3876, "matched_fragments": 489, "total_fragments": 1017, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001557035.1", "gtdb_species": "s__Reyranella sp001557035", "ani": 81.8155, "matched_fragments": 558, "total_fragments": 1017, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009772935.1", "gtdb_species": "s__Reyranella sp009772935", "ani": 81.7053, "matched_fragments": 622, "total_fragments": 1017, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002281855.1", "gtdb_species": "s__Reyranella sp002281855", "ani": 81.663, "matched_fragments": 622, "total_fragments": 1017, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_019039055.1", "gtdb_species": "s__Reyranella sp019039055", "ani": 81.6332, "matched_fragments": 647, "total_fragments": 1017, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004297265.1", "gtdb_species": "s__Reyranella sp004297265", "ani": 81.6297, "matched_fragments": 642, "total_fragments": 1017, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018240695.1", "gtdb_species": "s__Reyranella sp018240695", "ani": 81.2405, "matched_fragments": 504, "total_fragments": 1017, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.90", "min_intra_species_ani": "96.90", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903832005.1", "gtdb_species": "s__Reyranella aerosaccus_B", "ani": 80.6645, "matched_fragments": 579, "total_fragments": 1017, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903839865.1", "gtdb_species": "s__Reyranella aerosaccus_A", "ani": 80.6234, "matched_fragments": 499, "total_fragments": 1017, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.29", "min_intra_species_ani": "98.98", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_903915535.1", "gtdb_species": "s__Reyranella aerosaccus_C", "ani": 80.5464, "matched_fragments": 551, "total_fragments": 1017, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Reyranellales;f__Reyranellaceae;g__Reyranella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.05", "min_intra_species_ani": "99.05", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.046, "cell_length": 0.812, "doubling_h": null, "growth_tmp": 32.0, "optimum_tmp": 30.0, "optimum_ph": 6.5, "genome_size": 5771094.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Reyranellales", "f__Reyranellaceae", "g__Reyranella", "s__" ], "_genome_taxon": [ "Reyranella", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__Reyranellales", "f__Reyranellaceae", "g__Reyranella", "s__", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Reyranellales", "Reyranellaceae", "Reyranella", "s", "", "" ], "_meo": [ { "id": "MEO_0000737", "label": "lake water" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }