{ "type": "genome", "identifier": "GCA_021767665.1", "organism": "Pseudomonadales bacterium", "title": "Pseudomonadales bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Tehran", "publication": [ {} ], "properties": { "assembly_accession": "GCA_021767665.1", "bioproject": "PRJNA575141", "biosample": "SAMN14397667", "wgs_master": "JAASSX000000000.1", "refseq_category": "na", "taxid": "1891229", "species_taxid": "1891229", "organism_name": "Pseudomonadales bacterium", "infraspecific_name": "", "isolate": "KhS_metabat.27", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/01", "asm_name": "ASM2176766v1", "submitter": "University of Tehran", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/767/665/GCA_021767665.1_ASM2176766v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-01", "dateModified": "2022-02-01", "datePublished": "2022-02-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadales bacterium" ], "sample_taxid": [ "1891229" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.703 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 31.02, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2469532", "Number of Sequences": "522", "Longest Sequences (bp)": "18335", "N50 (bp)": "4973", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.3", "Number of CDSs": "1813", "Average Protein Length": "295.3", "Coding Ratio (%)": "65.0", "Number of rRNAs": "0", "Number of tRNAs": "13", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ketobacter alkanivorans", "strain": "strain=GI5", "accession": "GCA_002863865.1", "taxid": 1917421, "species_taxid": 1917421, "relation_to_type": "type", "validated": true, "ani": 77.431, "matched_fragments": 139, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax venustensis", "strain": "strain=ISO4", "accession": "GCA_015356855.1", "taxid": 172371, "species_taxid": 172371, "relation_to_type": "type", "validated": true, "ani": 76.851, "matched_fragments": 56, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax profundimaris", "strain": "strain=ST75FaO-1", "accession": "GCA_015265435.1", "taxid": 2735259, "species_taxid": 2735259, "relation_to_type": "type", "validated": true, "ani": 76.82, "matched_fragments": 67, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax gelatiniphagus", "strain": "strain=MEBiC 08158", "accession": "GCA_005938655.1", "taxid": 1194167, "species_taxid": 1194167, "relation_to_type": "type", "validated": true, "ani": 76.5485, "matched_fragments": 67, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 31.02, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002701845.1", "gtdb_species": "s__Ketobacter sp002701845", "ani": 99.3768, "matched_fragments": 550, "total_fragments": 572, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Ketobacteraceae;g__Ketobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_003671495.1", "gtdb_species": "s__Ketobacter sp003671495", "ani": 78.3656, "matched_fragments": 254, "total_fragments": 572, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Ketobacteraceae;g__Ketobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002708905.1", "gtdb_species": "s__Ketobacter sp002708905", "ani": 77.7217, "matched_fragments": 190, "total_fragments": 572, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Ketobacteraceae;g__Ketobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002471665.1", "gtdb_species": "s__Ketobacter sp002471665", "ani": 77.6771, "matched_fragments": 225, "total_fragments": 572, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Ketobacteraceae;g__Ketobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.82", "min_intra_species_ani": "99.43", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.93", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_002863865.1", "gtdb_species": "s__Ketobacter alkanivorans", "ani": 77.431, "matched_fragments": 139, "total_fragments": 572, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Ketobacteraceae;g__Ketobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": 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"min_intra_species_af": "0.87", "num_clustered_genomes": 46, "status": "-" }, { "accession": "GCF_005938655.1", "gtdb_species": "s__Alcanivorax gelatiniphagus", "ani": 76.5485, "matched_fragments": 67, "total_fragments": 572, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "98.53", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.159, "cell_length": 0.181, "doubling_h": 0.003, "growth_tmp": 28.99, "optimum_tmp": 28.439, "optimum_ph": 7.223, "genome_size": 4973266.217, "gc_content": 54.575, "coding_genes": 4450.277, "rRNA16S_genes": 5.452, "tRNA_genes": 67.069, "gram_stain": 0.0, "sporulation": 0.007, "motility": 0.593, "range_salinity": 0.666, "facultative_respiration": 0.024, 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