{ "type": "genome", "identifier": "GCA_021769345.1", "organism": "Peptostreptococcaceae bacterium", "title": "Peptostreptococcaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Calgary", "publication": [ {} ], "properties": { "assembly_accession": "GCA_021769345.1", "bioproject": "PRJNA675294", "biosample": "SAMN16706530", "wgs_master": "JAETTB000000000.1", "refseq_category": "na", "taxid": "1904861", "species_taxid": "1904861", "organism_name": "Peptostreptococcaceae bacterium", "infraspecific_name": "", "isolate": "S35_Bin5", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/01", "asm_name": "ASM2176934v1", "submitter": "University of Calgary", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/769/345/GCA_021769345.1_ASM2176934v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-01", "dateModified": "2022-02-01", "datePublished": "2022-02-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Peptostreptococcaceae bacterium" ], "sample_taxid": [ "1904861" ], "sample_host_organism": [ "Rattus rattus strain Sprague Dawley" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Calgary" ], "sample_host_location_id": [], "data_size": "0.604 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2205052", "Number of Sequences": "373", "Longest Sequences (bp)": "45083", "N50 (bp)": "9211", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "27.3", "Number of CDSs": "1852", "Average Protein Length": "282.3", "Coding Ratio (%)": "71.1", "Number of rRNAs": "5", "Number of tRNAs": "21", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Romboutsia ilealis", "strain": "strain=CRIB", "accession": "GCA_900015215.1", "taxid": 1115758, "species_taxid": 1115758, "relation_to_type": "type", "validated": true, "ani": 98.7388, "matched_fragments": 490, "total_fragments": 549, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Romboutsia timonensis", "strain": "strain=Marseille-P326", "accession": "GCA_900106845.1", "taxid": 1776391, "species_taxid": 1776391, "relation_to_type": "type", "validated": true, "ani": 92.0409, "matched_fragments": 457, "total_fragments": 549, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] dakarense", "strain": "strain=FF1", "accession": "GCA_000499525.1", "taxid": 1301100, "species_taxid": 1301100, "relation_to_type": "type", "validated": true, "ani": 81.2682, "matched_fragments": 305, "total_fragments": 549, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Romboutsia hominis", "strain": "strain=FRIFI", "accession": "GCA_900002575.1", "taxid": 1507512, "species_taxid": 1507512, "relation_to_type": "type", "validated": true, "ani": 81.023, "matched_fragments": 299, "total_fragments": 549, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Romboutsia lituseburensis", "strain": "strain=A25K", "accession": "GCA_900002825.1", "taxid": 1537, "species_taxid": 1537, "relation_to_type": "type", "validated": true, "ani": 80.8562, "matched_fragments": 318, "total_fragments": 549, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Romboutsia lituseburensis", "strain": "strain=DSM 797", "accession": "GCA_900103615.1", "taxid": 1537, "species_taxid": 1537, "relation_to_type": "type", "validated": true, "ani": 80.819, "matched_fragments": 320, "total_fragments": 549, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraclostridium bifermentans", "strain": "strain=ATCC 638", "accession": "GCA_006802875.1", "taxid": 1490, "species_taxid": 1490, "relation_to_type": "type", "validated": true, "ani": 79.2936, "matched_fragments": 243, "total_fragments": 549, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900015215.1", "gtdb_species": "s__Romboutsia ilealis", "ani": 98.7388, "matched_fragments": 490, "total_fragments": 549, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.59", "min_intra_species_ani": "98.59", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900106845.1", "gtdb_species": "s__Romboutsia timonensis", "ani": 92.0409, "matched_fragments": 457, "total_fragments": 549, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.20", "min_intra_species_ani": "98.12", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_904418825.1", "gtdb_species": "s__Romboutsia sp904418825", "ani": 89.3134, "matched_fragments": 397, "total_fragments": 549, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.17", 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