{ "type": "genome", "identifier": "GCA_021769425.1", "organism": "Eubacterium sp.", "title": "Eubacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Calgary", "publication": [ {} ], "properties": { "assembly_accession": "GCA_021769425.1", "bioproject": "PRJNA675294", "biosample": "SAMN16706526", "wgs_master": "JAETSX000000000.1", "refseq_category": "na", "taxid": "142586", "species_taxid": "142586", "organism_name": "Eubacterium sp.", "infraspecific_name": "", "isolate": "S35_Bin1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/01", "asm_name": "ASM2176942v1", "submitter": "University of Calgary", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/769/425/GCA_021769425.1_ASM2176942v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-01", "dateModified": "2022-02-01", "datePublished": "2022-02-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Eubacterium sp." ], "sample_taxid": [ "142586" ], "sample_host_organism": [ "Rattus rattus strain Sprague Dawley" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Calgary" ], "sample_host_location_id": [], "data_size": "1.390 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.48, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4915403", "Number of Sequences": "228", "Longest Sequences (bp)": "156886", "N50 (bp)": "65685", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.6", "Number of CDSs": "4592", "Average Protein Length": "301.0", "Coding Ratio (%)": "84.4", "Number of rRNAs": "0", "Number of tRNAs": "54", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterocloster clostridioformis", "strain": "strain=ATCC 25537", "accession": "GCA_900113155.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "type", "validated": true, "ani": 77.5381, "matched_fragments": 73, "total_fragments": 1523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia caecimuris", "strain": "strain=DSM 29492", "accession": "GCA_024622975.1", "taxid": 1796615, "species_taxid": 1796615, "relation_to_type": "type", "validated": true, "ani": 77.4704, "matched_fragments": 81, "total_fragments": 1523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=NCTC11224", "accession": "GCA_900447015.1", "taxid": 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