{ "type": "genome", "identifier": "GCA_021778655.1", "organism": "Actinomycetia bacterium", "title": "Actinomycetia bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University, Guangzhou", "publication": [ {} ], "properties": { "assembly_accession": "GCA_021778655.1", "bioproject": "PRJNA666025", "biosample": "SAMN20842499", "wgs_master": "JAJYCF000000000.1", "refseq_category": "na", "taxid": "1883427", "species_taxid": "1883427", "organism_name": "Actinomycetia bacterium", "infraspecific_name": "", "isolate": "BP9.bin35", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/01", "asm_name": "ASM2177865v1", "submitter": "Sun Yat-sen University, Guangzhou", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/778/655/GCA_021778655.1_ASM2177865v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-01", "dateModified": "2022-02-01", "datePublished": "2022-02-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetia bacterium" ], "sample_taxid": [ "1883427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Banpo Antimony Mine, Guizhou Province" ], "sample_host_location_id": [], "data_size": "0.537 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 56.47, "contamination": 3.47, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1946543", "Number of Sequences": "506", "Longest Sequences (bp)": "15147", "N50 (bp)": "3887", "Gap Ratio (%)": "0.008220", "GCcontent (%)": "70.6", "Number of CDSs": "1418", "Average Protein Length": "284.8", "Coding Ratio (%)": "62.2", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pedococcus cremeus", "strain": "strain=CGMCC 1.6963", "accession": "GCA_900111375.1", "taxid": 587636, "species_taxid": 587636, "relation_to_type": "type", "validated": true, "ani": 77.8784, "matched_fragments": 118, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia aerolata", "strain": "strain=DSM 18566", "accession": "GCA_000768695.1", "taxid": 442954, "species_taxid": 442954, "relation_to_type": "type", "validated": true, "ani": 77.8734, "matched_fragments": 111, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus mangrovi", "strain": "strain=KQZ13P-1", "accession": "GCA_018729305.1", "taxid": 2840470, "species_taxid": 2840470, "relation_to_type": "type", "validated": true, "ani": 77.7914, "matched_fragments": 138, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedococcus dokdonensis", "strain": "strain=DSM 22329", "accession": "GCA_900104525.1", "taxid": 443156, "species_taxid": 443156, "relation_to_type": "type", "validated": true, "ani": 77.5547, "matched_fragments": 114, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter endophyticus", "strain": "strain=YIM B02568", "accession": "GCA_016888335.1", "taxid": 2806261, "species_taxid": 2806261, "relation_to_type": "type", "validated": true, "ani": 77.5386, "matched_fragments": 109, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter melonis", "strain": "strain=NBRC107855", "accession": "GCA_020567375.1", "taxid": 262209, "species_taxid": 262209, "relation_to_type": "type", "validated": true, "ani": 77.2823, "matched_fragments": 116, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus dermatophilus", "strain": "strain=DSM 25571", "accession": "GCA_022568795.1", "taxid": 1076331, "species_taxid": 1076331, "relation_to_type": "type", "validated": true, "ani": 76.8299, "matched_fragments": 85, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariimicrobium ganziense", "strain": "strain=YIM S02566", "accession": "GCA_015352975.1", "taxid": 2773677, "species_taxid": 2773677, "relation_to_type": "type", "validated": true, "ani": 76.7485, "matched_fragments": 50, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus cauae", "strain": "strain=MKL-02", "accession": "GCA_009707125.1", "taxid": 2663847, "species_taxid": 2663847, "relation_to_type": "type", "validated": true, "ani": 76.7218, "matched_fragments": 93, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava coleopterorum", "strain": "strain=HDW11", "accession": "GCA_011393335.1", "taxid": 2714937, "species_taxid": 2714937, "relation_to_type": "type", "validated": true, "ani": 76.7217, "matched_fragments": 72, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus antarcticus", "strain": "strain=DSM 11053", "accession": "GCA_014193425.1", "taxid": 53388, "species_taxid": 53388, "relation_to_type": "type", "validated": true, "ani": 76.6337, "matched_fragments": 79, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus flavescens", "strain": "strain=SST-39T", "accession": "GCA_001998865.1", "taxid": 399497, "species_taxid": 399497, "relation_to_type": "type", "validated": true, "ani": 76.488, "matched_fragments": 55, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Raineyella antarctica", "strain": "strain=LZ-22", "accession": "GCA_900092135.1", "taxid": 1577474, "species_taxid": 1577474, "relation_to_type": "type", "validated": true, "ani": 76.4323, "matched_fragments": 63, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides euryhalodurans", "strain": "strain=MMS17-SY117", "accession": "GCA_004564375.1", "taxid": 2518370, "species_taxid": 2518370, "relation_to_type": "type", "validated": true, "ani": 76.3739, "matched_fragments": 82, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus flavus", "strain": "strain=CGMCC 4.6856", "accession": "GCA_900110855.1", "taxid": 1036181, "species_taxid": 1036181, "relation_to_type": "type", "validated": true, "ani": 76.3716, "matched_fragments": 104, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides solisilvae", "strain": "strain=Ka25", "accession": "GCA_003194625.1", "taxid": 1542435, "species_taxid": 1542435, "relation_to_type": "type", "validated": true, "ani": 76.3319, "matched_fragments": 70, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides rubriscoriae", "strain": "strain=DSM 23986", "accession": "GCA_008087085.1", "taxid": 642762, "species_taxid": 642762, "relation_to_type": "type", "validated": true, "ani": 76.2406, "matched_fragments": 93, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cacaoi", "strain": "strain=NRRL B-1220", "accession": "GCA_002154495.1", "taxid": 1898, "species_taxid": 1898, "relation_to_type": "type", "validated": true, "ani": 76.2399, "matched_fragments": 62, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_900101465.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 76.208, "matched_fragments": 83, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lianchengensis", "strain": "strain=CGMCC 4.6858", "accession": "GCA_013409225.1", "taxid": 1045774, "species_taxid": 1045774, "relation_to_type": "type", "validated": true, "ani": 76.1685, "matched_fragments": 85, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cacaoi", "strain": "strain=NBRC 12748", "accession": "GCA_006539165.1", "taxid": 1898, "species_taxid": 1898, "relation_to_type": "type", "validated": true, "ani": 76.1023, "matched_fragments": 69, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus sagamiharensis", "strain": "strain=DSM 21743", "accession": "GCA_900105785.1", "taxid": 546874, "species_taxid": 546874, "relation_to_type": "type", "validated": true, "ani": 76.101, "matched_fragments": 103, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Carbonactinospora thermoautotrophica", "strain": "strain=UBT1", "accession": "GCA_001543895.1", "taxid": 1469144, "species_taxid": 1469144, "relation_to_type": "type", "validated": true, "ani": 76.0316, "matched_fragments": 61, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 75.6664, "matched_fragments": 93, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 56.47, "contamination": 3.47, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003153855.1", "gtdb_species": "s__Fen-668 sp003153855", "ani": 83.411, "matched_fragments": 159, "total_fragments": 378, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Fen-668", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.46", "min_intra_species_ani": "99.46", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003158895.1", "gtdb_species": "s__Fen-668 sp003158895", "ani": 83.0399, "matched_fragments": 168, "total_fragments": 378, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Fen-668", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017882655.1", "gtdb_species": "s__Fen-668 sp017882655", "ani": 81.693, "matched_fragments": 132, "total_fragments": 378, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Fen-668", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016213595.1", "gtdb_species": "s__Fen-668 sp016213595", "ani": 80.4435, "matched_fragments": 134, "total_fragments": 378, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Fen-668", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001046855.1", "gtdb_species": "s__Tetrasphaera japonica", "ani": 78.0362, "matched_fragments": 146, "total_fragments": 378, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Tetrasphaera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011326735.1", "gtdb_species": "s__Phycicoccus endophyticus", "ani": 77.893, "matched_fragments": 124, "total_fragments": 378, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Phycicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_018139485.1", "gtdb_species": "s__Phycicoccus sp018139485", "ani": 77.8556, "matched_fragments": 133, "total_fragments": 378, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Phycicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016887965.1", "gtdb_species": "s__Phycicoccus sp016887965", "ani": 77.7757, "matched_fragments": 143, "total_fragments": 378, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Phycicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006438965.1", "gtdb_species": "s__Pedococcus bigeumensis", "ani": 77.6243, "matched_fragments": 102, "total_fragments": 378, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Pedococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900104525.1", "gtdb_species": "s__Pedococcus dokdonensis", "ani": 77.5547, "matched_fragments": 114, "total_fragments": 378, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Pedococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { 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