{ "type": "genome", "identifier": "GCA_021783045.1", "organism": "Actinomycetia bacterium", "title": "Actinomycetia bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University, Guangzhou", "publication": [ {} ], "properties": { "assembly_accession": "GCA_021783045.1", "bioproject": "PRJNA666025", "biosample": "SAMN20842297", "wgs_master": "JAJXUL000000000.1", "refseq_category": "na", "taxid": "1883427", "species_taxid": "1883427", "organism_name": "Actinomycetia bacterium", "infraspecific_name": "", "isolate": "BP4.bin8", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/01", "asm_name": "ASM2178304v1", "submitter": "Sun Yat-sen University, Guangzhou", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/783/045/GCA_021783045.1_ASM2178304v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-01", "dateModified": "2022-02-01", "datePublished": "2022-02-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetia bacterium" ], "sample_taxid": [ "1883427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Banpo Antimony Mine, Guizhou Province" ], "sample_host_location_id": [], "data_size": "1.501 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 70.68, "contamination": 4.05, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5361883", "Number of Sequences": "1421", "Longest Sequences (bp)": "15485", "N50 (bp)": "3714", "Gap Ratio (%)": "0.007460", "GCcontent (%)": "69.1", "Number of CDSs": "3993", "Average Protein Length": "266.4", "Coding Ratio (%)": "59.5", "Number of rRNAs": "2", "Number of tRNAs": "75", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Intrasporangium calvum", "strain": "strain=DSM 43043", "accession": "GCA_000184685.1", "taxid": 53358, "species_taxid": 53358, "relation_to_type": "type", "validated": true, "ani": 77.5812, "matched_fragments": 168, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Intrasporangium chromatireducens", "strain": "strain=Q5-1", "accession": "GCA_000576575.1", "taxid": 1386088, "species_taxid": 1386088, "relation_to_type": "type", "validated": true, "ani": 77.2427, "matched_fragments": 148, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava sinopodophylli", "strain": "strain=KCTC 33808", "accession": "GCA_004324755.1", "taxid": 1837344, "species_taxid": 1837344, "relation_to_type": "type", "validated": true, "ani": 76.9537, "matched_fragments": 131, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariimicrobium kwangyangense", "strain": "strain=DSM 21549", "accession": "GCA_000421525.1", "taxid": 396389, "species_taxid": 396389, "relation_to_type": "type", "validated": true, "ani": 76.7927, "matched_fragments": 111, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter hoylei", "strain": "strain=PVAS-1", "accession": "GCA_000297495.1", "taxid": 364298, "species_taxid": 364298, "relation_to_type": "type", "validated": true, "ani": 76.6095, "matched_fragments": 117, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter hoylei", "strain": "strain=PVAS-1", "accession": "GCA_004025845.1", "taxid": 364298, "species_taxid": 364298, "relation_to_type": "type", "validated": true, "ani": 76.5878, "matched_fragments": 117, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus lapidicaptus", "strain": "strain=IPBSL-7", "accession": "GCA_001693815.1", "taxid": 1427523, "species_taxid": 1427523, "relation_to_type": "type", "validated": true, "ani": 76.5876, "matched_fragments": 116, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus flavus", "strain": "strain=RP1", "accession": "GCA_001997295.1", "taxid": 1610493, "species_taxid": 1610493, "relation_to_type": "type", "validated": true, "ani": 76.4708, "matched_fragments": 103, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus flavus", "strain": "strain=RP1", "accession": "GCA_900107385.1", "taxid": 1610493, "species_taxid": 1610493, "relation_to_type": "type", "validated": true, "ani": 76.4682, "matched_fragments": 101, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertihabitans aurantiacus", "strain": "strain=CPCC 204711", "accession": "GCA_003344635.1", "taxid": 2282477, "species_taxid": 2282477, "relation_to_type": "type", "validated": true, "ani": 76.4628, "matched_fragments": 142, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enemella dayhoffiae", "strain": "strain=NML 130396", "accession": "GCA_002250625.1", "taxid": 2016507, "species_taxid": 2016507, "relation_to_type": "type", "validated": true, "ani": 76.3618, "matched_fragments": 108, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter limosus", "strain": "strain=NBRC 16128", "accession": "GCA_001570985.1", "taxid": 53458, "species_taxid": 53458, "relation_to_type": "type", "validated": true, "ani": 76.3611, "matched_fragments": 104, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 76.2773, "matched_fragments": 111, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus oleiagri", "strain": "strain=CGMCC 1.9159", "accession": "GCA_900103275.1", "taxid": 686624, "species_taxid": 686624, "relation_to_type": "type", "validated": true, "ani": 76.2483, "matched_fragments": 121, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propionibacterium freudenreichii subsp. freudenreichii", "strain": "strain=DSM 20271", "accession": "GCA_000940845.1", "taxid": 66712, "species_taxid": 1744, "relation_to_type": "type", "validated": true, "ani": 76.2049, "matched_fragments": 68, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides cavernaquae", "strain": "strain=K1W22B-1", "accession": "GCA_003600895.1", "taxid": 2321396, "species_taxid": 2321396, "relation_to_type": "type", "validated": true, "ani": 76.1802, "matched_fragments": 97, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides sambongensis", "strain": "strain=KUDC 5002", "accession": "GCA_006494815.1", "taxid": 2589074, "species_taxid": 2589074, "relation_to_type": "type", "validated": true, "ani": 76.078, "matched_fragments": 114, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas hominis", "strain": "strain=DSM 9581", "accession": "GCA_014201095.1", "taxid": 156981, "species_taxid": 156981, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0491, "matched_fragments": 139, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas hominis", "strain": "strain=NBRC 16055", "accession": "GCA_007989225.1", "taxid": 156981, "species_taxid": 156981, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0477, "matched_fragments": 136, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Auraticoccus monumenti", "strain": "strain=MON 2.2", "accession": "GCA_900101785.1", "taxid": 675864, "species_taxid": 675864, "relation_to_type": "type", "validated": true, "ani": 75.867, "matched_fragments": 165, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia wutianyii", "strain": "strain=Z294", "accession": "GCA_006349365.1", "taxid": 2585135, "species_taxid": 2585135, "relation_to_type": "type", "validated": true, "ani": 75.8664, "matched_fragments": 121, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces corchorusii", "strain": "strain=DSM 40340", "accession": "GCA_001514055.1", "taxid": 1903, "species_taxid": 1903, "relation_to_type": "type", "validated": true, "ani": 75.5669, "matched_fragments": 156, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces djakartensis", "strain": "strain=JCM 4957", "accession": "GCA_014651075.1", "taxid": 68193, "species_taxid": 68193, "relation_to_type": "type", "validated": true, "ani": 75.492, "matched_fragments": 138, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus speluncae", "strain": "strain=SYSU K12189", "accession": "GCA_009299835.1", "taxid": 2594267, "species_taxid": 2594267, "relation_to_type": "type", "validated": true, "ani": 75.4706, "matched_fragments": 150, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planotetraspora phitsanulokensis", "strain": "strain=NBRC 104273", "accession": "GCA_016863295.1", "taxid": 575192, "species_taxid": 575192, "relation_to_type": "type", "validated": true, "ani": 75.4332, "matched_fragments": 140, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium resistens", "strain": "strain=NBRC 103078", "accession": "GCA_001552355.1", "taxid": 156977, "species_taxid": 156977, "relation_to_type": "type", "validated": true, "ani": 75.4263, "matched_fragments": 77, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces calvus", "strain": "strain=CECT 3271", "accession": "GCA_014138735.1", "taxid": 67282, "species_taxid": 67282, "relation_to_type": "type", "validated": true, "ani": 75.3374, "matched_fragments": 148, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces calvus", "strain": "strain=JCM 4326", "accession": "GCA_014649315.1", "taxid": 67282, "species_taxid": 67282, "relation_to_type": "type", "validated": true, "ani": 75.3325, "matched_fragments": 149, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces silaceus", "strain": "strain=NRRL B-24166", "accession": "GCA_001419745.1", "taxid": 545123, "species_taxid": 545123, "relation_to_type": "type", "validated": true, "ani": 75.3038, "matched_fragments": 132, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces umbrinus", "strain": "strain=JCM 4521", "accession": "GCA_014650195.1", "taxid": 67370, "species_taxid": 67370, "relation_to_type": "type", "validated": true, "ani": 75.2627, "matched_fragments": 160, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 70.68, "contamination": 4.05, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017882655.1", "gtdb_species": "s__Fen-668 sp017882655", "ani": 78.3294, "matched_fragments": 112, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Fen-668", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003158895.1", "gtdb_species": "s__Fen-668 sp003158895", "ani": 77.8376, "matched_fragments": 128, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Fen-668", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016213595.1", "gtdb_species": "s__Fen-668 sp016213595", "ani": 77.5647, "matched_fragments": 114, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Fen-668", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007991735.1", "gtdb_species": "s__Terrabacter aerolatus", "ani": 77.5246, "matched_fragments": 165, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Terrabacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006716675.1", "gtdb_species": "s__Humibacillus xanthopallidus", "ani": 77.4261, "matched_fragments": 170, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Humibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013361975.1", "gtdb_species": "s__Terrabacter sp013361975", "ani": 77.362, "matched_fragments": 119, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Terrabacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.22", "min_intra_species_ani": "98.02", "mean_intra_species_af": "0.74", "min_intra_species_af": "0.70", 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"accession": "GCF_001693815.1", "gtdb_species": "s__Arachnia lapidicapta", "ani": 76.5876, "matched_fragments": 116, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "97.76", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_012517965.1", "gtdb_species": "s__Propioniciclava sp012517965", "ani": 76.5822, "matched_fragments": 118, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Propioniciclava", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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