{ "type": "genome", "identifier": "GCA_021785475.1", "organism": "Pseudomonadota bacterium", "title": "Pseudomonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University, Guangzhou", "publication": [ {} ], "properties": { "assembly_accession": "GCA_021785475.1", "bioproject": "PRJNA666025", "biosample": "SAMN20842574", "wgs_master": "JAJYFC000000000.1", "refseq_category": "na", "taxid": "1977087", "species_taxid": "1977087", "organism_name": "Pseudomonadota bacterium", "infraspecific_name": "", "isolate": "DBS1-1.bin84", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/01", "asm_name": "ASM2178547v1", "submitter": "Sun Yat-sen University, Guangzhou", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/785/475/GCA_021785475.1_ASM2178547v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-01", "dateModified": "2022-02-01", "datePublished": "2022-02-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadota bacterium" ], "sample_taxid": [ "1977087" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Dabaoshan Pyrite-Copper Mine, Guangdong Province" ], "sample_host_location_id": [], "data_size": "0.782 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2865331", "Number of Sequences": "34", "Longest Sequences (bp)": "400234", "N50 (bp)": "142470", "Gap Ratio (%)": "0.003490", "GCcontent (%)": "66.9", "Number of CDSs": "2627", "Average Protein Length": "325.9", "Coding Ratio (%)": "89.6", "Number of rRNAs": "0", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Metallibacterium scheffleri", "strain": "strain=DSM 24874", "accession": "GCA_004798955.1", "taxid": 993689, "species_taxid": 993689, "relation_to_type": "type", "validated": true, "ani": 96.519, "matched_fragments": 815, "total_fragments": 936, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Metallibacterium scheffleri", "strain": "strain=DKE6", "accession": "GCA_002077135.1", "taxid": 993689, "species_taxid": 993689, "relation_to_type": "type", "validated": true, "ani": 96.4143, "matched_fragments": 845, "total_fragments": 936, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Fulvimonas soli", "strain": "strain=LMG 19981", "accession": "GCA_006352285.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 79.0323, "matched_fragments": 413, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=DSM 14263", "accession": "GCA_003148905.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 79.0256, "matched_fragments": 440, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodanobacter denitrificans", "strain": "strain=2APBS1", "accession": "GCA_000230695.3", "taxid": 666685, "species_taxid": 666685, "relation_to_type": "type", "validated": true, "ani": 78.4536, "matched_fragments": 395, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frateuria terrea", "strain": "strain=DSM 26515", "accession": "GCA_900109025.1", "taxid": 529704, "species_taxid": 529704, "relation_to_type": "type", "validated": true, "ani": 78.3115, "matched_fragments": 329, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frateuria flava", "strain": "strain=MAH-13", "accession": "GCA_017837635.1", "taxid": 2821489, "species_taxid": 2821489, "relation_to_type": "type", "validated": true, "ani": 78.2776, "matched_fragments": 349, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frateuria terrea", "strain": "strain=CGMCC 1.7053", "accession": "GCA_900115705.1", "taxid": 529704, "species_taxid": 529704, "relation_to_type": "type", "validated": true, "ani": 78.2067, "matched_fragments": 336, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella japonica", "strain": "strain=DSM 16301", "accession": "GCA_001010355.1", "taxid": 231455, "species_taxid": 231455, "relation_to_type": "type", "validated": true, "ani": 77.8526, "matched_fragments": 259, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella amyloliquefaciens", "strain": "strain=DHC06", "accession": "GCA_004296575.1", "taxid": 1770545, "species_taxid": 1770545, "relation_to_type": "type", "validated": true, "ani": 77.8343, "matched_fragments": 289, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonella koreensis", "strain": "strain=DS-123", "accession": "GCA_001632775.1", "taxid": 323415, "species_taxid": 323415, "relation_to_type": "type", "validated": true, "ani": 77.6679, "matched_fragments": 329, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella choica", "strain": "strain=4 M-K27", "accession": "GCA_003977665.1", "taxid": 1927959, "species_taxid": 1927959, "relation_to_type": "type", "validated": true, "ani": 77.6057, "matched_fragments": 251, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella telluris", "strain": "strain=G9", "accession": "GCA_014297575.1", "taxid": 2763498, "species_taxid": 2763498, "relation_to_type": "type", "validated": true, "ani": 77.5882, "matched_fragments": 315, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella acidiphila", "strain": "strain=7MK23", "accession": "GCA_014863405.1", "taxid": 2775866, "species_taxid": 2775866, "relation_to_type": "type", "validated": true, "ani": 77.4636, "matched_fragments": 321, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tahibacter caeni", "strain": "strain=BUT-6", "accession": "GCA_024609805.1", "taxid": 1453545, "species_taxid": 1453545, "relation_to_type": "type", "validated": true, "ani": 77.4579, "matched_fragments": 299, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteibacter anthropi", "strain": "strain=CCUG 25036", "accession": "GCA_011759365.1", "taxid": 564369, "species_taxid": 564369, "relation_to_type": "type", "validated": true, "ani": 77.1496, "matched_fragments": 245, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter pythonis", "strain": "strain=4284/11", "accession": "GCA_003697345.1", "taxid": 2483112, "species_taxid": 2483112, "relation_to_type": "type", "validated": true, "ani": 77.1105, "matched_fragments": 203, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus malaysiensis", "strain": "strain=USMAA1020", "accession": "GCA_001854325.1", "taxid": 367825, "species_taxid": 367825, "relation_to_type": "type", "validated": true, "ani": 75.5593, "matched_fragments": 245, "total_fragments": 936, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus 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