{ "type": "genome", "identifier": "GCA_021792855.1", "organism": "Actinomycetia bacterium", "title": "Actinomycetia bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University, Guangzhou", "publication": [ {} ], "properties": { "assembly_accession": "GCA_021792855.1", "bioproject": "PRJNA666025", "biosample": "SAMN20843182", "wgs_master": "JAJYTW000000000.1", "refseq_category": "na", "taxid": "1883427", "species_taxid": "1883427", "organism_name": "Actinomycetia bacterium", "infraspecific_name": "", "isolate": "DX2.bin50", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/01", "asm_name": "ASM2179285v1", "submitter": "Sun Yat-sen University, Guangzhou", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/792/855/GCA_021792855.1_ASM2179285v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-01", "dateModified": "2022-02-01", "datePublished": "2022-02-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetia bacterium" ], "sample_taxid": [ "1883427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Dexing Copper Mine, Jiangxi Province" ], "sample_host_location_id": [], "data_size": "1.278 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4712588", "Number of Sequences": "380", "Longest Sequences (bp)": "89370", "N50 (bp)": "18910", "Gap Ratio (%)": "0.007427", "GCcontent (%)": "71.4", "Number of CDSs": "4064", "Average Protein Length": "314.3", "Coding Ratio (%)": "81.3", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermomonospora catenispora", "strain": "strain=3-22-3", "accession": "GCA_006363815.1", "taxid": 2493090, "species_taxid": 2493090, "relation_to_type": "type", "validated": true, "ani": 77.3554, "matched_fragments": 392, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonospora umbrina", "strain": "strain=DSM 43927", "accession": "GCA_003386555.1", "taxid": 111806, "species_taxid": 111806, "relation_to_type": "type", "validated": true, "ani": 77.2589, "matched_fragments": 387, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trebonia kvetii", "strain": "strain=15TR583", "accession": "GCA_007827045.1", "taxid": 2480626, "species_taxid": 2480626, "relation_to_type": "type", "validated": true, "ani": 77.2541, "matched_fragments": 502, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoallomurus bryophytorum", "strain": "strain=DSM 102200", "accession": "GCA_006716425.1", "taxid": 1490222, "species_taxid": 1490222, "relation_to_type": "type", "validated": true, "ani": 76.904, "matched_fragments": 424, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura coerulea", "strain": "strain=DSM 43675", "accession": "GCA_014208105.1", "taxid": 46159, "species_taxid": 46159, "relation_to_type": "type", "validated": true, "ani": 76.8318, "matched_fragments": 446, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium krabiense", "strain": "strain=DSM 45790", "accession": "GCA_014200435.1", "taxid": 763782, "species_taxid": 763782, "relation_to_type": "type", "validated": true, "ani": 76.7969, "matched_fragments": 444, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium rufum", "strain": "strain=NBRC 109079", "accession": "GCA_016863395.1", "taxid": 1381558, "species_taxid": 1381558, "relation_to_type": "type", "validated": true, "ani": 76.7307, "matched_fragments": 516, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura coerulea", "strain": "strain=JCM 3320", "accession": "GCA_014648535.1", "taxid": 46159, "species_taxid": 46159, "relation_to_type": "type", "validated": true, "ani": 76.72, "matched_fragments": 442, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, "relation_to_type": "type", "validated": true, "ani": 76.7092, "matched_fragments": 484, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura flavalba", "strain": "strain=DSM 45200", "accession": "GCA_000374305.1", "taxid": 1120938, "species_taxid": 1120938, "relation_to_type": "type", "validated": true, "ani": 76.6887, "matched_fragments": 383, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura parmotrematis", "strain": "strain=PM05-2", "accession": "GCA_019458805.1", "taxid": 2864039, "species_taxid": 2864039, "relation_to_type": "type", "validated": true, "ani": 76.6873, "matched_fragments": 498, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura spongiicola", "strain": "strain=LHW52907", "accession": "GCA_003432485.1", "taxid": 2303421, "species_taxid": 2303421, "relation_to_type": "type", "validated": true, "ani": 76.6826, "matched_fragments": 366, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura montaniterrae", "strain": "strain=CYP1-1B", "accession": "GCA_008923365.1", "taxid": 1803903, "species_taxid": 1803903, "relation_to_type": "type", "validated": true, "ani": 76.682, "matched_fragments": 502, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea antri", "strain": "strain=NN258", "accession": "GCA_013283785.1", "taxid": 2730852, "species_taxid": 2730852, "relation_to_type": "type", "validated": true, "ani": 76.675, "matched_fragments": 469, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium krabiense", "strain": "strain=NBRC 107571", "accession": "GCA_016863355.1", "taxid": 763782, "species_taxid": 763782, "relation_to_type": "type", "validated": true, "ani": 76.6589, "matched_fragments": 437, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura physcomitrii", "strain": "strain=LD22", "accession": "GCA_008923205.2", "taxid": 2650748, "species_taxid": 2650748, "relation_to_type": "type", "validated": true, "ani": 76.6283, "matched_fragments": 492, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura violacea", "strain": "strain=LCR2-06", "accession": "GCA_017573465.1", "taxid": 2819934, "species_taxid": 2819934, "relation_to_type": "type", "validated": true, "ani": 76.6282, "matched_fragments": 544, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura nitritigenes", "strain": "strain=L46", "accession": "GCA_017573545.1", "taxid": 134602, "species_taxid": 134602, "relation_to_type": "type", "validated": true, "ani": 76.6057, "matched_fragments": 540, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rayongensis", "strain": "strain=DSM 102126", "accession": "GCA_009831215.1", "taxid": 1429076, "species_taxid": 1429076, "relation_to_type": "type", "validated": true, "ani": 76.603, "matched_fragments": 403, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora corallina", "strain": "strain=NBRC 16416", "accession": "GCA_016863035.1", "taxid": 83302, "species_taxid": 83302, "relation_to_type": "type", "validated": true, "ani": 76.5598, "matched_fragments": 441, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinospica robiniae", "strain": "strain=DSM 44927", "accession": "GCA_000504285.1", "taxid": 304901, "species_taxid": 304901, "relation_to_type": "type", "validated": true, "ani": 76.4211, "matched_fragments": 423, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=WYY166", "accession": "GCA_009497075.1", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 76.3151, "matched_fragments": 466, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora elongata", "strain": "strain=7K502", "accession": "GCA_004348985.1", "taxid": 2530387, "species_taxid": 2530387, "relation_to_type": "type", "validated": true, "ani": 76.2634, "matched_fragments": 370, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea phyllanthi", "strain": "strain=PA1-10", "accession": "GCA_006334985.2", "taxid": 2219224, "species_taxid": 2219224, "relation_to_type": "type", "validated": true, "ani": 76.2518, "matched_fragments": 460, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharothrix ecbatanensis", "strain": "strain=DSM 45486", "accession": "GCA_014205015.1", "taxid": 1105145, "species_taxid": 1105145, "relation_to_type": "type", "validated": true, "ani": 76.1257, "matched_fragments": 297, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinacidiphila epipremni", "strain": "strain=PRB2-1", "accession": "GCA_012034175.1", "taxid": 2053013, "species_taxid": 2053013, "relation_to_type": "type", "validated": true, "ani": 75.9087, "matched_fragments": 424, "total_fragments": 1379, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017882645.1", "gtdb_species": "s__Chersky-822 sp017882645", "ani": 79.6265, "matched_fragments": 543, "total_fragments": 1379, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Chersky-822", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019246795.1", "gtdb_species": "s__Palsa-504 sp019246795", "ani": 78.0991, "matched_fragments": 392, "total_fragments": 1379, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Palsa-504", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003168215.1", "gtdb_species": "s__Palsa-506 sp003168215", "ani": 78.0654, "matched_fragments": 425, "total_fragments": 1379, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Palsa-506", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.63", "min_intra_species_ani": "99.30", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.78", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_003541285.1", "gtdb_species": "s__UBA9676 sp003541285", "ani": 77.9013, "matched_fragments": 405, "total_fragments": 1379, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__UBA9676", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019240215.1", "gtdb_species": "s__Bog-532 sp019240215", "ani": 77.8623, "matched_fragments": 380, "total_fragments": 1379, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Bog-532", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019239975.1", "gtdb_species": "s__JAFAZE01 sp019239975", "ani": 77.8088, "matched_fragments": 468, "total_fragments": 1379, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__JAFAZE01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003140115.1", "gtdb_species": "s__Palsa-504 sp003140115", "ani": 77.6952, "matched_fragments": 468, "total_fragments": 1379, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Palsa-504", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.54", "min_intra_species_ani": "99.54", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003164955.1", "gtdb_species": "s__Bog-532 sp003164955", "ani": 77.501, "matched_fragments": 455, "total_fragments": 1379, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Bog-532", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "99.72", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_006363815.1", "gtdb_species": "s__Thermomonospora catenispora", "ani": 77.3494, "matched_fragments": 390, "total_fragments": 1379, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Thermomonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003589885.1", "gtdb_species": "s__Thermomonospora amylolytica", "ani": 77.3323, "matched_fragments": 464, "total_fragments": 1379, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Thermomonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "98.39", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003386555.1", "gtdb_species": "s__Thermomonospora umbrina", "ani": 77.2376, "matched_fragments": 390, "total_fragments": 1379, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Thermomonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003161205.1", "gtdb_species": "s__Palsa-504 sp003161205", "ani": 77.2227, "matched_fragments": 316, "total_fragments": 1379, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Palsa-504", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009380095.1", "gtdb_species": "s__WHSL01 sp009380095", "ani": 77.0738, "matched_fragments": 370, "total_fragments": 1379, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__WHSL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016863395.1", "gtdb_species": "s__Sphaerisporangium rufum", "ani": 76.7017, "matched_fragments": 521, "total_fragments": 1379, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Sphaerisporangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003002095.1", "gtdb_species": "s__Allonocardiopsis opalescens", "ani": 76.6969, "matched_fragments": 424, "total_fragments": 1379, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Allonocardiopsis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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