{ "type": "genome", "identifier": "GCA_021795975.1", "organism": "Actinomycetia bacterium", "title": "Actinomycetia bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University, Guangzhou", "publication": [ {} ], "properties": { "assembly_accession": "GCA_021795975.1", "bioproject": "PRJNA666025", "biosample": "SAMN20843052", "wgs_master": "JAJYOW000000000.1", "refseq_category": "na", "taxid": "1883427", "species_taxid": "1883427", "organism_name": "Actinomycetia bacterium", "infraspecific_name": "", "isolate": "DS3.bin11", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/01", "asm_name": "ASM2179597v1", "submitter": "Sun Yat-sen University, Guangzhou", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/795/975/GCA_021795975.1_ASM2179597v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-01", "dateModified": "2022-02-01", "datePublished": "2022-02-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetia bacterium" ], "sample_taxid": [ "1883427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Dashan Tin-Zinc Mine, Guangxi Province" ], "sample_host_location_id": [], "data_size": "0.934 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 57.41, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3350393", "Number of Sequences": "744", "Longest Sequences (bp)": "17565", "N50 (bp)": "4666", "Gap Ratio (%)": "0.005074", "GCcontent (%)": "69.9", "Number of CDSs": "2657", "Average Protein Length": "267.6", "Coding Ratio (%)": "63.7", "Number of rRNAs": "0", "Number of tRNAs": "70", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Trebonia kvetii", "strain": "strain=15TR583", "accession": "GCA_007827045.1", "taxid": 2480626, "species_taxid": 2480626, "relation_to_type": "type", "validated": true, "ani": 77.5445, "matched_fragments": 227, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonospora catenispora", "strain": "strain=3-22-3", "accession": "GCA_006363815.1", "taxid": 2493090, "species_taxid": 2493090, "relation_to_type": "type", "validated": true, "ani": 76.9979, "matched_fragments": 155, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura latina", "strain": "strain=ATCC BAA-277", "accession": "GCA_012396395.1", "taxid": 163603, "species_taxid": 163603, "relation_to_type": "type", "validated": true, "ani": 76.7182, "matched_fragments": 169, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura mexicana", "strain": "strain=DSM 44485", "accession": "GCA_900188105.1", "taxid": 134959, "species_taxid": 134959, "relation_to_type": "type", "validated": true, "ani": 76.5096, "matched_fragments": 174, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura parmotrematis", "strain": "strain=PM05-2", "accession": "GCA_019458805.1", "taxid": 2864039, "species_taxid": 2864039, "relation_to_type": "type", "validated": true, "ani": 76.4796, "matched_fragments": 215, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura viridis", "strain": "strain=DSM 43175", "accession": "GCA_015751755.1", "taxid": 58110, "species_taxid": 58110, "relation_to_type": "type", "validated": true, "ani": 76.4511, "matched_fragments": 206, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura madurae", "strain": "strain=DSM 43067", "accession": "GCA_900115095.1", "taxid": 1993, "species_taxid": 1993, "relation_to_type": "type", "validated": true, "ani": 76.4326, "matched_fragments": 203, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura physcomitrii", "strain": "strain=LD22", "accession": "GCA_008923205.2", "taxid": 2650748, "species_taxid": 2650748, "relation_to_type": "type", "validated": true, "ani": 76.4055, "matched_fragments": 199, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora fusca", "strain": "strain=NEAU-HEGS1-5", "accession": "GCA_005864065.1", "taxid": 2576905, "species_taxid": 2576905, "relation_to_type": "type", "validated": true, "ani": 76.3726, "matched_fragments": 166, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium rufum", "strain": "strain=NBRC 109079", "accession": "GCA_016863395.1", "taxid": 1381558, "species_taxid": 1381558, "relation_to_type": "type", "validated": true, "ani": 76.3609, "matched_fragments": 204, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rayongensis", "strain": "strain=DSM 102126", "accession": "GCA_009831215.1", "taxid": 1429076, "species_taxid": 1429076, "relation_to_type": "type", "validated": true, "ani": 76.3052, "matched_fragments": 160, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura litoris", "strain": "strain=NEAU-AAG5", "accession": "GCA_009733595.1", "taxid": 2678616, "species_taxid": 2678616, "relation_to_type": "type", "validated": true, "ani": 76.3045, "matched_fragments": 184, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura montaniterrae", "strain": "strain=CYP1-1B", "accession": "GCA_008923365.1", "taxid": 1803903, "species_taxid": 1803903, "relation_to_type": "type", "validated": true, "ani": 76.2586, "matched_fragments": 208, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura flavalba", "strain": "strain=DSM 45200", "accession": "GCA_000374305.1", "taxid": 1120938, "species_taxid": 1120938, "relation_to_type": "type", "validated": true, "ani": 76.2404, "matched_fragments": 166, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis potens", "strain": "strain=DSM 45234", "accession": "GCA_000341105.1", "taxid": 1246458, "species_taxid": 1246458, "relation_to_type": "type", "validated": true, "ani": 76.2112, "matched_fragments": 193, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis composta", "strain": "strain=DSM 44551", "accession": "GCA_014200805.1", "taxid": 157465, "species_taxid": 157465, "relation_to_type": "type", "validated": true, "ani": 76.1761, "matched_fragments": 190, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter roseus", "strain": "strain=DSM 45764", "accession": "GCA_007994135.1", "taxid": 1181884, "species_taxid": 1181884, "relation_to_type": "type", "validated": true, "ani": 76.1414, "matched_fragments": 130, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides iriomotensis", "strain": "strain=NBRC 105384", "accession": "GCA_004168035.1", "taxid": 715784, "species_taxid": 715784, "relation_to_type": "type", "validated": true, "ani": 76.103, "matched_fragments": 120, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineococcus indalonis", "strain": "strain=T90", "accession": "GCA_009906395.1", "taxid": 2696566, "species_taxid": 2696566, "relation_to_type": "type", "validated": true, "ani": 76.0447, "matched_fragments": 96, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Embleya hyalina", "strain": "strain=NBRC 13850", "accession": "GCA_003967355.1", "taxid": 516124, "species_taxid": 516124, "relation_to_type": "type", "validated": true, "ani": 75.9428, "matched_fragments": 164, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces roseolilacinus", "strain": "strain=JCM 4335", "accession": "GCA_014649335.1", "taxid": 66904, "species_taxid": 66904, "relation_to_type": "type", "validated": true, "ani": 75.8721, "matched_fragments": 123, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces mashuensis", "strain": "strain=JCM 4059", "accession": "GCA_014654785.1", "taxid": 33904, "species_taxid": 33904, "relation_to_type": "type", "validated": true, "ani": 75.8091, "matched_fragments": 136, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora cheerisanensis", "strain": "strain=KCTC 2395", "accession": "GCA_000696185.1", "taxid": 81942, "species_taxid": 81942, "relation_to_type": "type", "validated": true, "ani": 75.7081, "matched_fragments": 198, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces huiliensis", "strain": "strain=SCA2-4", "accession": "GCA_020037025.1", "taxid": 2876027, "species_taxid": 2876027, "relation_to_type": "type", "validated": true, "ani": 75.6761, "matched_fragments": 121, "total_fragments": 748, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 57.41, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017882645.1", "gtdb_species": "s__Chersky-822 sp017882645", "ani": 78.906, "matched_fragments": 259, "total_fragments": 748, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Chersky-822", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003168215.1", "gtdb_species": "s__Palsa-506 sp003168215", "ani": 77.7672, "matched_fragments": 185, "total_fragments": 748, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Palsa-506", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.63", "min_intra_species_ani": "99.30", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.78", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_007827045.1", "gtdb_species": "s__Trebonia kvetii", "ani": 77.531, "matched_fragments": 228, "total_fragments": 748, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Trebonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019239975.1", "gtdb_species": "s__JAFAZE01 sp019239975", "ani": 77.4329, "matched_fragments": 203, "total_fragments": 748, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__JAFAZE01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019246795.1", "gtdb_species": "s__Palsa-504 sp019246795", "ani": 77.4089, "matched_fragments": 155, "total_fragments": 748, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Palsa-504", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003541285.1", "gtdb_species": "s__UBA9676 sp003541285", "ani": 77.3958, "matched_fragments": 193, "total_fragments": 748, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__UBA9676", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019240215.1", "gtdb_species": "s__Bog-532 sp019240215", "ani": 77.1314, "matched_fragments": 156, "total_fragments": 748, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Bog-532", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003164955.1", "gtdb_species": "s__Bog-532 sp003164955", "ani": 77.0079, "matched_fragments": 190, "total_fragments": 748, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Bog-532", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "99.72", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_006363815.1", "gtdb_species": "s__Thermomonospora catenispora", "ani": 76.9819, "matched_fragments": 156, "total_fragments": 748, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Thermomonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003589885.1", "gtdb_species": "s__Thermomonospora amylolytica", "ani": 76.9238, "matched_fragments": 189, "total_fragments": 748, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Thermomonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "98.39", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003168255.1", "gtdb_species": "s__PALSA-505 sp003168255", "ani": 76.8682, "matched_fragments": 185, "total_fragments": 748, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__PALSA-505", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003289645.1", "gtdb_species": "s__Actinomadura_D craniellae", "ani": 76.5599, "matched_fragments": 192, "total_fragments": 748, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Actinomadura_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015751755.1", "gtdb_species": "s__Spirillospora viridis", "ani": 76.4686, "matched_fragments": 204, "total_fragments": 748, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900115095.1", "gtdb_species": "s__Spirillospora madurae", "ani": 76.4141, "matched_fragments": 205, "total_fragments": 748, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.34", "min_intra_species_ani": "99.27", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_008923205.2", 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