{ "type": "genome", "identifier": "GCA_021810175.1", "organism": "Acidobacteriota bacterium", "title": "Acidobacteriota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University, Guangzhou", "publication": [ {} ], "properties": { "assembly_accession": "GCA_021810175.1", "bioproject": "PRJNA666025", "biosample": "SAMN20843587", "wgs_master": "JAJZJJ000000000.1", "refseq_category": "na", "taxid": "1978231", "species_taxid": "1978231", "organism_name": "Acidobacteriota bacterium", "infraspecific_name": "", "isolate": "LSA5.bin29", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/01", "asm_name": "ASM2181017v1", "submitter": "Sun Yat-sen University, Guangzhou", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/810/175/GCA_021810175.1_ASM2181017v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-01", "dateModified": "2022-02-01", "datePublished": "2022-02-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidobacteriota bacterium" ], "sample_taxid": [ "1978231" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Longshenao Polymetallic Mine, Guangxi Province" ], "sample_host_location_id": [], "data_size": "1.130 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 76.98, "contamination": 5.21, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3950497", "Number of Sequences": "734", "Longest Sequences (bp)": "23730", "N50 (bp)": "5924", "Gap Ratio (%)": "0.003544", "GCcontent (%)": "62.3", "Number of CDSs": "2802", "Average Protein Length": "315.2", "Coding Ratio (%)": "67.1", "Number of rRNAs": "1", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acidobacterium capsulatum", "strain": "strain=ATCC 51196", "accession": "GCA_000022565.1", "taxid": 33075, "species_taxid": 33075, "relation_to_type": "type", "validated": true, "ani": 78.2543, "matched_fragments": 220, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracidobacterium acidisoli", "strain": "strain=4G-K13", "accession": "GCA_003428625.2", "taxid": 2303751, "species_taxid": 2303751, "relation_to_type": "type", "validated": true, "ani": 77.9419, "matched_fragments": 165, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidipila rosea", "strain": "strain=DSM 103428", "accession": "GCA_004339725.1", "taxid": 768535, "species_taxid": 768535, "relation_to_type": "type", "validated": true, "ani": 77.2519, "matched_fragments": 101, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter aggregans", "strain": "strain=DSM 19364", "accession": "GCA_000745965.1", "taxid": 570835, "species_taxid": 570835, "relation_to_type": "type", "validated": true, "ani": 77.2088, "matched_fragments": 117, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium dinghuense", "strain": "strain=DHOF10", "accession": "GCA_004123295.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 77.1675, "matched_fragments": 136, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium dinghuense", "strain": "strain=CGMCC 1.13007", "accession": "GCA_014640355.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 77.1225, "matched_fragments": 142, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alloacidobacterium dinghuense", "strain": "strain=4Y35", "accession": "GCA_014274465.1", "taxid": 2763107, "species_taxid": 2763107, "relation_to_type": "type", "validated": true, "ani": 76.9396, "matched_fragments": 93, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicella pectinivorans", "strain": "strain=DSM 21001", "accession": "GCA_900114625.1", "taxid": 474950, "species_taxid": 474950, "relation_to_type": "type", "validated": true, "ani": 76.8949, "matched_fragments": 89, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium bohemicum", "strain": "strain=S15", "accession": "GCA_001006305.1", "taxid": 1577686, "species_taxid": 1577686, "relation_to_type": "type", "validated": true, "ani": 76.7847, "matched_fragments": 133, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium bohemicum", "strain": "strain=DSM 103733", "accession": "GCA_014201455.1", "taxid": 1577686, "species_taxid": 1577686, "relation_to_type": "type", "validated": true, "ani": 76.7689, "matched_fragments": 135, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bryocella elongata", "strain": "strain=DSM 22489", "accession": "GCA_900108185.1", "taxid": 863522, "species_taxid": 863522, "relation_to_type": "type", "validated": true, "ani": 76.5665, "matched_fragments": 74, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter dinghuensis", "strain": "strain=CGMCC 1.12997", "accession": "GCA_014640335.1", "taxid": 1560005, "species_taxid": 1560005, "relation_to_type": "type", "validated": true, "ani": 76.5651, "matched_fragments": 63, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occallatibacter riparius", "strain": "strain=DSM 25168", "accession": "GCA_025264625.1", "taxid": 1002689, "species_taxid": 1002689, "relation_to_type": "type", "validated": true, "ani": 76.5105, "matched_fragments": 106, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicella sibirica", "strain": "strain=AF10", "accession": "GCA_004115155.1", "taxid": 2479048, "species_taxid": 2479048, "relation_to_type": "type", "validated": true, "ani": 76.4863, "matched_fragments": 79, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terriglobus roseus", "strain": "strain=DSM 18391", "accession": "GCA_000265425.1", "taxid": 392734, "species_taxid": 392734, "relation_to_type": "type", "validated": true, "ani": 76.4462, "matched_fragments": 52, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter flagellatus", "strain": "strain=HZ411", "accession": "GCA_025264665.1", "taxid": 1933044, "species_taxid": 1933044, "relation_to_type": "type", "validated": true, "ani": 76.4033, "matched_fragments": 70, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicella mallensis", "strain": "strain=MP5ACTX8", "accession": "GCA_000178955.2", "taxid": 940614, "species_taxid": 940614, "relation_to_type": "type", "validated": true, "ani": 76.3967, "matched_fragments": 70, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terracidiphilus gabretensis", "strain": "strain=S55", "accession": "GCA_001449115.1", "taxid": 1577687, "species_taxid": 1577687, "relation_to_type": "type", "validated": true, "ani": 76.3617, "matched_fragments": 78, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Edaphobacter lichenicola", "strain": "strain=DSM 104462", "accession": "GCA_025264645.1", "taxid": 2051959, "species_taxid": 2051959, "relation_to_type": "suspected-type", "validated": true, "ani": 76.1086, "matched_fragments": 73, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 76.98, "contamination": 5.21, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCF_000022565.1", "gtdb_species": "s__Acidobacterium capsulatum", "ani": 78.2543, "matched_fragments": 220, "total_fragments": 951, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Acidobacteriales;f__Acidobacteriaceae;g__Acidobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_011333575.1", 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