{
    "type": "genome",
    "identifier": "GCA_021821425.1",
    "organism": "Pseudomonadota bacterium",
    "title": "Pseudomonadota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Sun Yat-sen University, Guangzhou",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_021821425.1",
        "bioproject": "PRJNA666025",
        "biosample": "SAMN20844156",
        "wgs_master": "JAKACL000000000.1",
        "refseq_category": "na",
        "taxid": "1977087",
        "species_taxid": "1977087",
        "organism_name": "Pseudomonadota bacterium",
        "infraspecific_name": "",
        "isolate": "WH4.bin10",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/02/01",
        "asm_name": "ASM2182142v1",
        "submitter": "Sun Yat-sen University, Guangzhou",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/821/425/GCA_021821425.1_ASM2182142v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-02-01",
    "dateModified": "2022-02-01",
    "datePublished": "2022-02-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonadota bacterium"
        ],
        "sample_taxid": [
            "1977087"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Wuhu Polymetallic Mine, Anhui Province"
        ],
        "sample_host_location_id": [],
        "data_size": "0.680 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 60.19,
        "contamination": 11.98,
        "strain_heterogeneity": 28.57,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2431546",
        "Number of Sequences": "261",
        "Longest Sequences (bp)": "33664",
        "N50 (bp)": "11077",
        "Gap Ratio (%)": "0.000823",
        "GCcontent (%)": "64.3",
        "Number of CDSs": "2214",
        "Average Protein Length": "292.2",
        "Coding Ratio (%)": "79.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thiobacillus denitrificans",
                "strain": "strain=DSM 12475",
                "accession": "GCA_000376425.1",
                "taxid": 36861,
                "species_taxid": 36861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1784,
                "matched_fragments": 465,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiobacillus thioparus",
                "strain": "strain=DSM 505",
                "accession": "GCA_000373385.1",
                "taxid": 931,
                "species_taxid": 931,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4737,
                "matched_fragments": 449,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodocyclus purpureus",
                "strain": "strain=DSM 168",
                "accession": "GCA_016653115.1",
                "taxid": 1067,
                "species_taxid": 1067,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9086,
                "matched_fragments": 160,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Crenobacter intestini",
                "strain": "strain=GY 70310",
                "accession": "GCA_004919095.1",
                "taxid": 2563443,
                "species_taxid": 2563443,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5261,
                "matched_fragments": 146,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thauera chlorobenzoica",
                "strain": "strain=3CB-1",
                "accession": "GCA_900108255.1",
                "taxid": 96773,
                "species_taxid": 96773,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3596,
                "matched_fragments": 172,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thauera chlorobenzoica",
                "strain": "strain=3CB1",
                "accession": "GCA_001922305.1",
                "taxid": 96773,
                "species_taxid": 96773,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3096,
                "matched_fragments": 170,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thauera linaloolentis",
                "strain": "strain=47Lol = DSM 12138",
                "accession": "GCA_000310205.1",
                "taxid": 76112,
                "species_taxid": 76112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2876,
                "matched_fragments": 156,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thauera linaloolentis",
                "strain": "strain=DSM 12138",
                "accession": "GCA_000621305.1",
                "taxid": 76112,
                "species_taxid": 76112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2313,
                "matched_fragments": 159,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cupriavidus cauae",
                "strain": "strain=MKL-01",
                "accession": "GCA_008632125.1",
                "taxid": 2608999,
                "species_taxid": 2608999,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1325,
                "matched_fragments": 174,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aromatoleum buckelii",
                "strain": "strain=U120",
                "accession": "GCA_012910785.2",
                "taxid": 200254,
                "species_taxid": 200254,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0882,
                "matched_fragments": 117,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cupriavidus metallidurans",
                "strain": "strain=CH34",
                "accession": "GCA_000196015.1",
                "taxid": 119219,
                "species_taxid": 119219,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8276,
                "matched_fragments": 107,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bordetella pertussis",
                "strain": "strain=18323",
                "accession": "GCA_000306945.1",
                "taxid": 520,
                "species_taxid": 520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8113,
                "matched_fragments": 122,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bordetella parapertussis",
                "strain": "strain=FDAARGOS_1541",
                "accession": "GCA_020735925.1",
                "taxid": 519,
                "species_taxid": 519,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.7898,
                "matched_fragments": 134,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Andreprevotia chitinilytica",
                "strain": "strain=DSM 18519",
                "accession": "GCA_000711875.1",
                "taxid": 396808,
                "species_taxid": 396808,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2636,
                "matched_fragments": 94,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 60.19,
            "contamination": 11.98,
            "strain_heterogeneity": 28.57
        },
        "gtdb_result": [
            {
                "accession": "GCA_018820765.1",
                "gtdb_species": "s__Thiobacillus sp018820765",
                "ani": 86.0599,
                "matched_fragments": 492,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_018262815.1",
                "gtdb_species": "s__Thiobacillus sp018262815",
                "ani": 85.3364,
                "matched_fragments": 429,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003510325.1",
                "gtdb_species": "s__Thiobacillus sp003510325",
                "ani": 85.209,
                "matched_fragments": 394,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.33",
                "min_intra_species_ani": "99.33",
                "mean_intra_species_af": "0.73",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002256995.1",
                "gtdb_species": "s__Thiobacillus sp002256995",
                "ani": 85.1976,
                "matched_fragments": 506,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.94",
                "min_intra_species_ani": "97.93",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_011391285.1",
                "gtdb_species": "s__Thiobacillus sp011391285",
                "ani": 84.924,
                "matched_fragments": 404,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001897675.1",
                "gtdb_species": "s__Thiobacillus sp001897675",
                "ani": 84.8354,
                "matched_fragments": 429,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.41",
                "min_intra_species_ani": "95.18",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002403375.1",
                "gtdb_species": "s__Thiobacillus denitrificans_E",
                "ani": 84.2239,
                "matched_fragments": 451,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016195805.1",
                "gtdb_species": "s__Thiobacillus sp016195805",
                "ani": 84.1309,
                "matched_fragments": 450,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002424845.1",
                "gtdb_species": "s__Thiobacillus denitrificans_F",
                "ani": 83.5265,
                "matched_fragments": 278,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018820745.1",
                "gtdb_species": "s__Thiobacillus sp018820745",
                "ani": 83.4865,
                "matched_fragments": 309,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001899305.1",
                "gtdb_species": "s__Thiobacillus sp001899305",
                "ani": 83.4446,
                "matched_fragments": 446,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.65",
                "min_intra_species_ani": "95.89",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_016124745.1",
                "gtdb_species": "s__Thiobacillus sp016124745",
                "ani": 82.5368,
                "matched_fragments": 403,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_008923285.1",
                "gtdb_species": "s__UBA6918 sp008923285",
                "ani": 80.4936,
                "matched_fragments": 308,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__UBA6918",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002327405.1",
                "gtdb_species": "s__UBA6918 sp002327405",
                "ani": 79.4015,
                "matched_fragments": 235,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__UBA6918",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Thiobacillaceae",
        "g__Thiobacillus",
        "s__Thiobacillus sp021821425"
    ],
    "_genome_taxon": [
        "Pseudomonadota",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Thiobacillaceae",
        "g__Thiobacillus",
        "s__Thiobacillus sp021821425",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Thiobacillaceae",
        "Thiobacillus",
        "Thiobacillus",
        "sp021821425"
    ],
    "_meo": [
        {
            "id": "MEO_0000034",
            "label": "acid mine drainage"
        },
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}