{ "type": "genome", "identifier": "GCA_021821585.1", "organism": "Actinomycetia bacterium", "title": "Actinomycetia bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University, Guangzhou", "publication": [ {} ], "properties": { "assembly_accession": "GCA_021821585.1", "bioproject": "PRJNA666025", "biosample": "SAMN20844150", "wgs_master": "JAKACF000000000.1", "refseq_category": "na", "taxid": "1883427", "species_taxid": "1883427", "organism_name": "Actinomycetia bacterium", "infraspecific_name": "", "isolate": "WH2.bin86", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/01", "asm_name": "ASM2182158v1", "submitter": "Sun Yat-sen University, Guangzhou", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/821/585/GCA_021821585.1_ASM2182158v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-01", "dateModified": "2022-02-01", "datePublished": "2022-02-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetia bacterium" ], "sample_taxid": [ "1883427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Wuhu Polymetallic Mine, Anhui Province" ], "sample_host_location_id": [], "data_size": "0.822 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 80.3, "contamination": 2.08, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3064341", "Number of Sequences": "433", "Longest Sequences (bp)": "36580", "N50 (bp)": "9304", "Gap Ratio (%)": "0.004569", "GCcontent (%)": "72.5", "Number of CDSs": "2503", "Average Protein Length": "308.5", "Coding Ratio (%)": "75.6", "Number of rRNAs": "0", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomarinicola tropica", "strain": "strain=SCSIO 58843", "accession": "GCA_009650215.1", "taxid": 2789776, "species_taxid": 2789776, "relation_to_type": "type", "validated": true, "ani": 76.5149, "matched_fragments": 202, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola sediminis", "strain": "strain=SYSU G02662", "accession": "GCA_014805525.1", "taxid": 2751370, "species_taxid": 2751370, "relation_to_type": "type", "validated": true, "ani": 76.2941, "matched_fragments": 124, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidimicrobium ferrooxidans", "strain": "strain=DSM 10331", "accession": "GCA_000023265.1", "taxid": 53635, "species_taxid": 53635, "relation_to_type": "type", "validated": true, "ani": 76.2318, "matched_fragments": 71, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 76.0957, "matched_fragments": 192, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter fluminis", "strain": "strain=DSM 18936", "accession": "GCA_004364865.1", "taxid": 467091, "species_taxid": 467091, "relation_to_type": "type", "validated": true, "ani": 75.7958, "matched_fragments": 144, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marmoricola aequoreus", "strain": "strain=NRRL B-24464", "accession": "GCA_000720335.1", "taxid": 397278, "species_taxid": 397278, "relation_to_type": "type", "validated": true, "ani": 75.491, "matched_fragments": 161, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sennicomposti", "strain": "strain=RCPT1-4", "accession": "GCA_019890635.1", "taxid": 2873384, "species_taxid": 2873384, "relation_to_type": "type", "validated": true, "ani": 75.4793, "matched_fragments": 176, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spiralis", "strain": "strain=JCM 3302", "accession": "GCA_014654675.1", "taxid": 66376, "species_taxid": 66376, "relation_to_type": "type", "validated": true, "ani": 75.4525, "matched_fragments": 171, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces naganishii", "strain": "strain=JCM 4654", "accession": "GCA_014650575.1", "taxid": 285447, "species_taxid": 285447, "relation_to_type": "type", "validated": true, "ani": 75.4091, "matched_fragments": 190, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia wutianyii", "strain": "strain=Z294", "accession": "GCA_006349365.1", "taxid": 2585135, "species_taxid": 2585135, "relation_to_type": "type", "validated": true, "ani": 75.2794, "matched_fragments": 147, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura meyerae", "strain": "strain=DSM 44715", "accession": "GCA_900188445.1", "taxid": 240840, "species_taxid": 240840, "relation_to_type": "type", "validated": true, "ani": 75.2346, "matched_fragments": 212, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes nipponensis", "strain": "strain=NBRC 14063", "accession": "GCA_016862275.1", "taxid": 135950, "species_taxid": 135950, "relation_to_type": "type", "validated": true, "ani": 75.183, "matched_fragments": 191, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura chibensis", "strain": "strain=NBRC 106107", "accession": "GCA_001552135.1", "taxid": 392828, "species_taxid": 392828, "relation_to_type": "type", "validated": true, "ani": 75.181, "matched_fragments": 234, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium sucinum", "strain": "strain=JCM 19831", "accession": "GCA_014647515.1", "taxid": 1424081, "species_taxid": 1424081, "relation_to_type": "type", "validated": true, "ani": 75.1776, "matched_fragments": 263, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura chibensis", "strain": "strain=JCM 14158", "accession": "GCA_008085895.1", "taxid": 392828, "species_taxid": 392828, "relation_to_type": "type", "validated": true, "ani": 75.1663, "matched_fragments": 238, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 75.1185, "matched_fragments": 178, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis pretoriensis", "strain": "strain=DSM 44654", "accession": "GCA_900107925.1", "taxid": 218821, "species_taxid": 218821, "relation_to_type": "type", "validated": true, "ani": 75.0906, "matched_fragments": 192, "total_fragments": 803, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis kentuckyensis", "strain": "strain=NRRL B-24129", "accession": "GCA_002155975.1", "taxid": 218823, "species_taxid": 218823, "relation_to_type": "type", "validated": true, "ani": 75.0772, "matched_fragments": 183, 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