{ "type": "genome", "identifier": "GCA_021821705.1", "organism": "Actinomycetia bacterium", "title": "Actinomycetia bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University, Guangzhou", "publication": [ {} ], "properties": { "assembly_accession": "GCA_021821705.1", "bioproject": "PRJNA666025", "biosample": "SAMN20844149", "wgs_master": "JAKACE000000000.1", "refseq_category": "na", "taxid": "1883427", "species_taxid": "1883427", "organism_name": "Actinomycetia bacterium", "infraspecific_name": "", "isolate": "WH2.bin85", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/01", "asm_name": "ASM2182170v1", "submitter": "Sun Yat-sen University, Guangzhou", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/821/705/GCA_021821705.1_ASM2182170v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-01", "dateModified": "2022-02-01", "datePublished": "2022-02-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetia bacterium" ], "sample_taxid": [ "1883427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Wuhu Polymetallic Mine, Anhui Province" ], "sample_host_location_id": [], "data_size": "0.751 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 65.81, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2700481", "Number of Sequences": "522", "Longest Sequences (bp)": "21380", "N50 (bp)": "5300", "Gap Ratio (%)": "0.008517", "GCcontent (%)": "70.3", "Number of CDSs": "1962", "Average Protein Length": "308.4", "Coding Ratio (%)": "67.2", "Number of rRNAs": "1", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhabdothermincola sediminis", "strain": "strain=SYSU G02662", "accession": "GCA_014805525.1", "taxid": 2751370, "species_taxid": 2751370, "relation_to_type": "type", "validated": true, "ani": 75.6893, "matched_fragments": 59, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 75.6355, "matched_fragments": 83, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertimonas flava", "strain": "strain=SYSU D60003", "accession": "GCA_003426815.1", "taxid": 2064846, "species_taxid": 2064846, "relation_to_type": "type", "validated": true, "ani": 75.6324, "matched_fragments": 64, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomarinicola tropica", "strain": "strain=SCSIO 58843", "accession": "GCA_009650215.1", "taxid": 2789776, "species_taxid": 2789776, "relation_to_type": "type", "validated": true, "ani": 75.4685, "matched_fragments": 67, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter fluminis", "strain": "strain=DSM 18936", "accession": "GCA_004364865.1", "taxid": 467091, "species_taxid": 467091, "relation_to_type": "type", "validated": true, "ani": 75.185, "matched_fragments": 50, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinosynnema mirum", "strain": "strain=DSM 43827", "accession": "GCA_000023245.1", "taxid": 40567, "species_taxid": 40567, "relation_to_type": "type", "validated": true, "ani": 74.9487, "matched_fragments": 66, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes durhamensis", "strain": "strain=NBRC 14914", "accession": "GCA_016862175.1", "taxid": 113563, "species_taxid": 113563, "relation_to_type": "type", "validated": true, "ani": 74.7048, "matched_fragments": 74, "total_fragments": 641, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 65.81, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003158835.1", "gtdb_species": "s__Fen-671 sp003158835", "ani": 77.3573, "matched_fragments": 108, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Palsa-688;g__Fen-671", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003166025.1", "gtdb_species": "s__Fen-671 sp003166025", "ani": 77.0731, "matched_fragments": 178, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Palsa-688;g__Fen-671", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.76", "min_intra_species_ani": "99.70", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_902805555.1", "gtdb_species": "s__CADCSY01 sp902805555", "ani": 76.1574, "matched_fragments": 67, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__CADCSY01;g__CADCSY01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003155135.1", "gtdb_species": "s__Bog-515 sp003155135", "ani": 75.8286, "matched_fragments": 66, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__RAAP-2;g__Bog-515", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.76", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 17, "status": "-" }, { "accession": "GCA_016794585.1", "gtdb_species": "s__JAEUJM01 sp016794585", "ani": 75.8192, "matched_fragments": 100, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAEUJM01;g__JAEUJM01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017577565.1", "gtdb_species": "s__ZC4RG19 sp017577565", "ani": 75.7838, "matched_fragments": 91, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JACDCH01;g__ZC4RG19", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005888325.1", "gtdb_species": "s__AC-14 sp005888325", "ani": 75.7338, "matched_fragments": 66, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__AC-14;g__AC-14", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004366205.1", "gtdb_species": "s__SIRW01 sp004366205", "ani": 75.7333, "matched_fragments": 99, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__SIRW01;g__SIRW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003156795.1", "gtdb_species": "s__PALSA-688 sp003156795", "ani": 75.7028, "matched_fragments": 50, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Palsa-688;g__PALSA-688", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003426815.1", "gtdb_species": "s__Desertimonas flava", "ani": 75.6177, "matched_fragments": 65, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__Ilumatobacteraceae;g__Desertimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003453695.1", "gtdb_species": "s__UBA8190 sp003453695", "ani": 75.5081, "matched_fragments": 63, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA8190;g__UBA8190", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003697065.1", "gtdb_species": "s__J010 sp003697065", "ani": 75.4868, "matched_fragments": 52, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__UBA11606;g__J010", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016845305.1", "gtdb_species": "s__UBA9410 sp016845305", "ani": 75.4566, "matched_fragments": 68, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__MedAcidi-G1;g__UBA9410", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012730075.1", "gtdb_species": "s__JAAYBP01 sp012730075", "ani": 75.4337, "matched_fragments": 61, "total_fragments": 641, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__JAAYBP01;g__JAAYBP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Acidimicrobiia", "o__Acidimicrobiales", "f__Palsa-688", "g__JAJZMF01", "s__JAJZMF01 sp021821705" ], "_genome_taxon": [ "Actinomycetia", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Acidimicrobiia", "o__Acidimicrobiales", "f__Palsa-688", "g__JAJZMF01", "s__JAJZMF01 sp021821705", "Bacteria", "Actinomycetota", "Acidimicrobiia", "Acidimicrobiales", "Palsa-688", "JAJZMF01", "JAJZMF01", "sp021821705" ], "_meo": [ { "id": "MEO_0000034", "label": "acid mine drainage" }, { "id": "MEO_0000066", "label": "sediment" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }