{ "type": "genome", "identifier": "GCA_022013435.1", "organism": "Pseudodesulfovibrio aespoeensis", "title": "Pseudodesulfovibrio aespoeensis", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Ecole Polytechnique Federale de Lausanne (EPFL)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022013435.1", "bioproject": "PRJNA625450", "biosample": "SAMN19414163", "wgs_master": "JAKLQH000000000.1", "refseq_category": "na", "taxid": "182210", "species_taxid": "182210", "organism_name": "Pseudodesulfovibrio aespoeensis", "infraspecific_name": "", "isolate": "bin S2.5", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/05", "asm_name": "ASM2201343v1", "submitter": "Ecole Polytechnique Federale de Lausanne (EPFL)", "gbrs_paired_asm": "GCF_022013435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/013/435/GCA_022013435.1_ASM2201343v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-05", "dateModified": "2022-02-05", "datePublished": "2022-02-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudodesulfovibrio aespoeensis" ], "sample_taxid": [ "182210" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland: Olkiluoto" ], "sample_host_location_id": [], "data_size": "0.996 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3551295", "Number of Sequences": "131", "Longest Sequences (bp)": "143279", "N50 (bp)": "43816", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.7", "Number of CDSs": "3247", "Average Protein Length": "315.0", "Coding Ratio (%)": "86.4", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudodesulfovibrio aespoeensis", "strain": "strain=Aspo-2", "accession": "GCA_000176915.2", "taxid": 182210, "species_taxid": 182210, "relation_to_type": "type", "validated": true, "ani": 99.9785, "matched_fragments": 1115, "total_fragments": 1116, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudodesulfovibrio alkaliphilus", "strain": "strain=F-1", "accession": "GCA_009729555.1", "taxid": 2661613, "species_taxid": 2661613, "relation_to_type": "type", "validated": true, "ani": 84.1433, "matched_fragments": 803, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio mercurii", "strain": "strain=ND132", "accession": "GCA_000189295.2", "taxid": 641491, "species_taxid": 641491, "relation_to_type": "type", "validated": true, "ani": 81.8059, "matched_fragments": 691, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio indicus", "strain": "strain=DSM 101483", "accession": "GCA_004365595.1", "taxid": 1716143, "species_taxid": 1716143, "relation_to_type": "type", "validated": true, "ani": 81.8023, "matched_fragments": 681, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio indicus", "strain": "strain=J2", "accession": "GCA_001563225.1", "taxid": 1716143, "species_taxid": 1716143, "relation_to_type": "type", "validated": true, "ani": 81.7473, "matched_fragments": 681, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio hydrargyri", "strain": "strain=BerOc1", "accession": "GCA_001874525.1", "taxid": 2125990, "species_taxid": 2125990, "relation_to_type": "type", "validated": true, "ani": 81.2844, "matched_fragments": 690, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio cashew", "strain": "strain=SRB007", "accession": "GCA_009762795.1", "taxid": 2678688, "species_taxid": 2678688, "relation_to_type": "type", "validated": true, "ani": 80.5337, "matched_fragments": 602, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio sulfodismutans", "strain": "strain=DSM 3696", "accession": "GCA_010499425.1", "taxid": 63561, "species_taxid": 63561, "relation_to_type": "type", "validated": true, "ani": 77.181, "matched_fragments": 240, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio sulfodismutans", "strain": "strain=DSM 3696", "accession": "GCA_013376455.1", "taxid": 63561, "species_taxid": 63561, "relation_to_type": "type", "validated": true, "ani": 77.1419, "matched_fragments": 247, "total_fragments": 1116, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000176915.2", "gtdb_species": "s__Pseudodesulfovibrio aespoeensis", "ani": 99.9785, "matched_fragments": 1115, "total_fragments": 1116, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Pseudodesulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.94", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.98", "num_clustered_genomes": 8, "status": "conclusive" }, { "accession": "GCF_009729555.1", "gtdb_species": "s__Pseudodesulfovibrio sp009729555", "ani": 84.1108, "matched_fragments": 806, "total_fragments": 1116, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Pseudodesulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000189295.2", "gtdb_species": "s__Pseudodesulfovibrio mercurii", "ani": 81.7961, "matched_fragments": 692, "total_fragments": 1116, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Pseudodesulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001563225.1", "gtdb_species": 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"gtdb_species": "s__Pseudodesulfovibrio sp015709315", "ani": 81.109, "matched_fragments": 608, "total_fragments": 1116, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Pseudodesulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009762795.1", "gtdb_species": "s__Pseudodesulfovibrio cashew", "ani": 80.5449, "matched_fragments": 602, "total_fragments": 1116, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Pseudodesulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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