{
    "type": "genome",
    "identifier": "GCA_022013455.1",
    "organism": "Syntrophaceae bacterium",
    "title": "Syntrophaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Ecole Polytechnique Federale de Lausanne (EPFL)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022013455.1",
        "bioproject": "PRJNA625450",
        "biosample": "SAMN19414164",
        "wgs_master": "JAKLQI000000000.1",
        "refseq_category": "na",
        "taxid": "2052184",
        "species_taxid": "2052184",
        "organism_name": "Syntrophaceae bacterium",
        "infraspecific_name": "",
        "isolate": "bin N2.62",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/02/05",
        "asm_name": "ASM2201345v1",
        "submitter": "Ecole Polytechnique Federale de Lausanne (EPFL)",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/013/455/GCA_022013455.1_ASM2201345v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-02-05",
    "dateModified": "2022-02-05",
    "datePublished": "2022-02-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Syntrophaceae bacterium"
        ],
        "sample_taxid": [
            "2052184"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Finland: Olkiluoto"
        ],
        "sample_host_location_id": [],
        "data_size": "1.070 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 93.75,
        "contamination": 12.04,
        "strain_heterogeneity": 10.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3741490",
        "Number of Sequences": "450",
        "Longest Sequences (bp)": "45125",
        "N50 (bp)": "11722",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.0",
        "Number of CDSs": "3287",
        "Average Protein Length": "286.1",
        "Coding Ratio (%)": "75.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 93.75,
            "contamination": 12.04,
            "strain_heterogeneity": 10.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_018896355.1",
                "gtdb_species": "s__UBA5619 sp018896355",
                "ani": 99.4054,
                "matched_fragments": 656,
                "total_fragments": 1009,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA5619;g__UBA5619",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.97",
                "min_intra_species_ani": "97.39",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCA_001873745.1",
                "gtdb_species": "s__UBA5619 sp001873745",
                "ani": 89.6725,
                "matched_fragments": 519,
                "total_fragments": 1009,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA5619;g__UBA5619",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.43",
                "min_intra_species_ani": "99.33",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903903205.1",
                "gtdb_species": "s__UBA5619 sp903903205",
                "ani": 84.6285,
                "matched_fragments": 290,
                "total_fragments": 1009,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA5619;g__UBA5619",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003141195.1",
                "gtdb_species": "s__UBA5619 sp003141195",
                "ani": 84.3767,
                "matched_fragments": 455,
                "total_fragments": 1009,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA5619;g__UBA5619",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.85",
                "min_intra_species_ani": "99.82",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_002423465.1",
                "gtdb_species": "s__UBA5619 sp002423465",
                "ani": 81.6712,
                "matched_fragments": 361,
                "total_fragments": 1009,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA5619;g__UBA5619",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016935075.1",
                "gtdb_species": "s__UBA5619 sp016935075",
                "ani": 81.4851,
                "matched_fragments": 319,
                "total_fragments": 1009,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA5619;g__UBA5619",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018819165.1",
                "gtdb_species": "s__UBA5619 sp018819165",
                "ani": 81.4556,
                "matched_fragments": 257,
                "total_fragments": 1009,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA5619;g__UBA5619",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "97.46",
                "mean_intra_species_af": "0.68",
                "min_intra_species_af": "0.68",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_018827585.1",
                "gtdb_species": "s__UBA5619 sp018827585",
                "ani": 80.9325,
                "matched_fragments": 342,
                "total_fragments": 1009,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA5619;g__UBA5619",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.31",
                "min_intra_species_ani": "99.28",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002424545.1",
                "gtdb_species": "s__UBA5619 sp002424545",
                "ani": 79.9361,
                "matched_fragments": 310,
                "total_fragments": 1009,
                "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Syntrophia;o__Syntrophales;f__UBA5619;g__UBA5619",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.094,
        "cell_length": 0.377,
        "doubling_h": 1.431,
        "growth_tmp": 35.0,
        "optimum_tmp": 34.722,
        "optimum_ph": 7.149,
        "genome_size": 4176389.15,
        "gc_content": 50.41,
        "coding_genes": 3784.666,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 48.333,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.666,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.333,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Syntrophia",
        "o__Syntrophales",
        "f__UBA5619",
        "g__UBA5619",
        "s__UBA5619 sp018896355"
    ],
    "_genome_taxon": [
        "Syntrophaceae",
        "bacterium",
        "d__Bacteria",
        "p__Desulfobacterota",
        "c__Syntrophia",
        "o__Syntrophales",
        "f__UBA5619",
        "g__UBA5619",
        "s__UBA5619 sp018896355",
        "Bacteria",
        "Desulfobacterota",
        "Syntrophia",
        "Syntrophales",
        "UBA5619",
        "UBA5619",
        "UBA5619",
        "sp018896355"
    ],
    "_meo": [
        {
            "id": "MEO_0000366",
            "label": "ground water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}