{
    "type": "genome",
    "identifier": "GCA_022072455.1",
    "organism": "Verrucomicrobiae bacterium",
    "title": "Verrucomicrobiae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Wisconsin-Madison",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022072455.1",
        "bioproject": "PRJNA559529",
        "biosample": "SAMN24272024",
        "wgs_master": "JAJVHY000000000.1",
        "refseq_category": "na",
        "taxid": "2499141",
        "species_taxid": "2499141",
        "organism_name": "Verrucomicrobiae bacterium",
        "infraspecific_name": "",
        "isolate": "Bin_23R",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/02/08",
        "asm_name": "ASM2207245v1",
        "submitter": "University of Wisconsin-Madison",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/072/455/GCA_022072455.1_ASM2207245v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-02-08",
    "dateModified": "2022-02-08",
    "datePublished": "2022-02-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Verrucomicrobiae bacterium"
        ],
        "sample_taxid": [
            "2499141"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:Nine Springs Wastewater Treatment Plant, Madison Metropolitan Sewerage District, Dane County, Madison, WI"
        ],
        "sample_host_location_id": [],
        "data_size": "1.354 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4819195",
        "Number of Sequences": "36",
        "Longest Sequences (bp)": "566381",
        "N50 (bp)": "167251",
        "Gap Ratio (%)": "0.002698",
        "GCcontent (%)": "59.7",
        "Number of CDSs": "4187",
        "Average Protein Length": "355.1",
        "Coding Ratio (%)": "92.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900299315.1",
                "gtdb_species": "s__OMJI01 sp900299315",
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                "matched_fragments": 188,
                "total_fragments": 1587,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Palsa-1439;f__Palsa-1439;g__OMJI01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903847335.1",
                "gtdb_species": "s__CAINDI01 sp903847335",
                "ani": 77.2349,
                "matched_fragments": 145,
                "total_fragments": 1587,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Palsa-1439;f__Palsa-1439;g__CAINDI01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011374075.1",
                "gtdb_species": "s__DRVI01 sp011374075",
                "ani": 77.1804,
                "matched_fragments": 172,
                "total_fragments": 1587,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Palsa-1439;f__Palsa-1439;g__DRVI01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016871575.1",
                "gtdb_species": "s__CAIKAP01 sp016871575",
                "ani": 76.9285,
                "matched_fragments": 173,
                "total_fragments": 1587,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Palsa-1439;f__Palsa-1439;g__CAIKAP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903825435.1",
                "gtdb_species": "s__CAIKAP01 sp903825435",
                "ani": 76.7181,
                "matched_fragments": 159,
                "total_fragments": 1587,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Palsa-1439;f__Palsa-1439;g__CAIKAP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.89",
                "min_intra_species_ani": "99.81",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003164675.1",
                "gtdb_species": "s__Palsa-1439 sp003164675",
                "ani": 76.6223,
                "matched_fragments": 111,
                "total_fragments": 1587,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Palsa-1439;f__Palsa-1439;g__Palsa-1439",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.79",
                "min_intra_species_ani": "99.50",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_003152315.1",
                "gtdb_species": "s__Palsa-1439 sp003152315",
                "ani": 76.576,
                "matched_fragments": 137,
                "total_fragments": 1587,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Palsa-1439;f__Palsa-1439;g__Palsa-1439",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011373785.1",
                "gtdb_species": "s__CAIKAP01 sp011373785",
                "ani": 76.5431,
                "matched_fragments": 110,
                "total_fragments": 1587,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Palsa-1439;f__Palsa-1439;g__CAIKAP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903912445.1",
                "gtdb_species": "s__DP16D-bin41 sp903912445",
                "ani": 75.1991,
                "matched_fragments": 59,
                "total_fragments": 1587,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Kiritimatiellae;o__LD1-PB3;f__CAIQIC01;g__DP16D-bin41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Palsa-1439",
        "f__Palsa-1439",
        "g__CAINDI01",
        "s__CAINDI01 sp022072455"
    ],
    "_genome_taxon": [
        "Verrucomicrobiae",
        "bacterium",
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Palsa-1439",
        "f__Palsa-1439",
        "g__CAINDI01",
        "s__CAINDI01 sp022072455",
        "Bacteria",
        "Verrucomicrobiota",
        "Verrucomicrobiae",
        "Palsa-1439",
        "Palsa-1439",
        "CAINDI01",
        "CAINDI01",
        "sp022072455"
    ],
    "_meo": [
        {
            "id": "MEO_0000119",
            "label": "bioreactor"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}