{
    "type": "genome",
    "identifier": "GCA_022181045.1",
    "organism": "Candidatus Scalindua sp.",
    "title": "Candidatus Scalindua sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Water quality control, Division of Environmental Engineering, Faculty of Engineering, Department of civil engineering, Hokkaido university",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022181045.1",
        "bioproject": "PRJDB12757",
        "biosample": "SAMD00433877",
        "wgs_master": "BQMX00000000.1",
        "refseq_category": "na",
        "taxid": "2268189",
        "species_taxid": "2268189",
        "organism_name": "Candidatus Scalindua sp.",
        "infraspecific_name": "",
        "isolate": "SCALA701",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/01/21",
        "asm_name": "ASM2218104v1",
        "submitter": "Water quality control, Division of Environmental Engineering, Faculty of Engineering, Department of civil engineering, Hokkaido university",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/181/045/GCA_022181045.1_ASM2218104v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-01-21",
    "dateModified": "2022-01-21",
    "datePublished": "2022-01-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Scalindua sp."
        ],
        "sample_taxid": [
            "2268189"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Nagaoka"
        ],
        "sample_host_location_id": [],
        "data_size": "1.286 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4498465",
        "Number of Sequences": "120",
        "Longest Sequences (bp)": "215288",
        "N50 (bp)": "77408",
        "Gap Ratio (%)": "0.006224",
        "GCcontent (%)": "41.1",
        "Number of CDSs": "3748",
        "Average Protein Length": "312.7",
        "Coding Ratio (%)": "78.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_004282745.1",
                "gtdb_species": "s__SCAELEC01 sp004282745",
                "ani": 99.993,
                "matched_fragments": 1428,
                "total_fragments": 1442,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Scalinduaceae;g__SCAELEC01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017368835.1",
                "gtdb_species": "s__Scalindua_A sediminis",
                "ani": 76.4825,
                "matched_fragments": 87,
                "total_fragments": 1442,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Scalinduaceae;g__Scalindua_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.30",
                "min_intra_species_ani": "98.63",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.60",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Planctomycetota",
        "c__Brocadiia",
        "o__Brocadiales",
        "f__Scalinduaceae",
        "g__SCAELEC01",
        "s__SCAELEC01 sp004282745"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Scalindua",
        "sp.",
        "d__Bacteria",
        "p__Planctomycetota",
        "c__Brocadiia",
        "o__Brocadiales",
        "f__Scalinduaceae",
        "g__SCAELEC01",
        "s__SCAELEC01 sp004282745",
        "Bacteria",
        "Planctomycetota",
        "Brocadiia",
        "Brocadiales",
        "Scalinduaceae",
        "SCAELEC01",
        "SCAELEC01",
        "sp004282745"
    ],
    "_meo": [
        {
            "id": "MEO_0000013",
            "label": "sludge"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}