{
    "type": "genome",
    "identifier": "GCA_022340195.1",
    "organism": "Chromatiaceae bacterium",
    "title": "Chromatiaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Marine Biological Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022340195.1",
        "bioproject": "PRJNA757271",
        "biosample": "SAMN20958563",
        "wgs_master": "JAJDOL000000000.1",
        "refseq_category": "na",
        "taxid": "2049432",
        "species_taxid": "2049432",
        "organism_name": "Chromatiaceae bacterium",
        "infraspecific_name": "",
        "isolate": "MASpbin.6",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/02/17",
        "asm_name": "ASM2234019v1",
        "submitter": "Marine Biological Laboratory",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/340/195/GCA_022340195.1_ASM2234019v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-02-17",
    "dateModified": "2022-02-17",
    "datePublished": "2022-02-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Chromatiaceae bacterium"
        ],
        "sample_taxid": [
            "2049432"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Rowley, Massachusetts"
        ],
        "sample_host_location_id": [],
        "data_size": "1.252 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4388732",
        "Number of Sequences": "379",
        "Longest Sequences (bp)": "78055",
        "N50 (bp)": "15639",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.2",
        "Number of CDSs": "3787",
        "Average Protein Length": "296.3",
        "Coding Ratio (%)": "76.7",
        "Number of rRNAs": "1",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thiohalocapsa marina",
                "strain": "strain=DSM 19078",
                "accession": "GCA_008632335.1",
                "taxid": 424902,
                "species_taxid": 424902,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4369,
                "matched_fragments": 185,
                "total_fragments": 1288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Allochromatium tepidum",
                "strain": "strain=NZ",
                "accession": "GCA_018409545.1",
                "taxid": 553982,
                "species_taxid": 553982,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1977,
                "matched_fragments": 153,
                "total_fragments": 1288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiorhodococcus minor",
                "strain": "strain=DSM 11518",
                "accession": "GCA_010820565.1",
                "taxid": 57489,
                "species_taxid": 57489,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0306,
                "matched_fragments": 197,
                "total_fragments": 1288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiohalocapsa halophila",
                "strain": "strain=DSM 6210",
                "accession": "GCA_016583825.1",
                "taxid": 69359,
                "species_taxid": 69359,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0015,
                "matched_fragments": 214,
                "total_fragments": 1288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioflavicoccus mobilis",
                "strain": "strain=8321",
                "accession": "GCA_000327045.1",
                "taxid": 80679,
                "species_taxid": 80679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9712,
                "matched_fragments": 172,
                "total_fragments": 1288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiocystis violacea",
                "strain": "strain=DSM 207",
                "accession": "GCA_016583575.1",
                "taxid": 13725,
                "species_taxid": 13725,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9085,
                "matched_fragments": 175,
                "total_fragments": 1288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiocapsa rosea",
                "strain": "strain=DSM 235",
                "accession": "GCA_003634315.1",
                "taxid": 69360,
                "species_taxid": 69360,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8113,
                "matched_fragments": 149,
                "total_fragments": 1288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marichromatium purpuratum",
                "strain": "strain=984",
                "accession": "GCA_000224005.3",
                "taxid": 37487,
                "species_taxid": 37487,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7898,
                "matched_fragments": 189,
                "total_fragments": 1288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Allochromatium humboldtianum",
                "strain": "strain=DSM 21881",
                "accession": "GCA_013385175.1",
                "taxid": 504901,
                "species_taxid": 504901,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7872,
                "matched_fragments": 164,
                "total_fragments": 1288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiocapsa bogorovii",
                "strain": "strain=BBS",
                "accession": "GCA_021228795.1",
                "taxid": 521689,
                "species_taxid": 521689,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7791,
                "matched_fragments": 167,
                "total_fragments": 1288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marichromatium bheemlicum",
                "strain": "strain=DSM 18632",
                "accession": "GCA_012276755.1",
                "taxid": 365339,
                "species_taxid": 365339,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6148,
                "matched_fragments": 174,
                "total_fragments": 1288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marichromatium gracile",
                "strain": "strain=DSM 203",
                "accession": "GCA_016583515.1",
                "taxid": 1048,
                "species_taxid": 1048,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6033,
                "matched_fragments": 203,
                "total_fragments": 1288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marichromatium gracile",
                "strain": "strain=DSM 203",
                "accession": "GCA_004343155.1",
                "taxid": 1048,
                "species_taxid": 1048,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5952,
                "matched_fragments": 208,
                "total_fragments": 1288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halochromatium glycolicum",
                "strain": "strain=DSM 11080",
                "accession": "GCA_016584085.1",
                "taxid": 85075,
                "species_taxid": 85075,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.191,
                "matched_fragments": 135,
                "total_fragments": 1288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sedimenticola selenatireducens",
                "strain": "strain=DSM 17993",
                "accession": "GCA_000428045.1",
                "taxid": 191960,
                "species_taxid": 191960,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1227,
                "matched_fragments": 62,
                "total_fragments": 1288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arenimonas caeni",
                "strain": "strain=z29",
                "accession": "GCA_003024235.1",
                "taxid": 2058085,
                "species_taxid": 2058085,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1147,
                "matched_fragments": 51,
                "total_fragments": 1288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas salinisoli",
                "strain": "strain=SJ-92",
                "accession": "GCA_013425525.1",
                "taxid": 2752307,
                "species_taxid": 2752307,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7894,
                "matched_fragments": 57,
                "total_fragments": 1288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas indica",
                "strain": "strain=PPL560",
                "accession": "GCA_022669045.1",
                "taxid": 2912242,
                "species_taxid": 2912242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4024,
                "matched_fragments": 54,
                "total_fragments": 1288,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter tataouinensis",
                "strain": "strain=TTB310",
                "accession": "GCA_000215705.1",
                "taxid": 94132,
                "species_taxid": 94132,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.386,
                "matched_fragments": 55,
                "total_fragments": 1288,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900092655.1",
                "gtdb_species": "s__Thiosymbion oneisti",
                "ani": 78.8046,
                "matched_fragments": 307,
                "total_fragments": 1288,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiosymbion",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.35",
                "min_intra_species_ani": "96.34",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_011392765.1",
                "gtdb_species": "s__Thiosymbion ectosymbiont",
                "ani": 78.226,
                "matched_fragments": 359,
                "total_fragments": 1288,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiosymbion",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018435665.1",
                "gtdb_species": "s__M0108 sp018435665",
                "ani": 77.437,
                "matched_fragments": 168,
                "total_fragments": 1288,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__M0108",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "99.16",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019136395.1",
                "gtdb_species": "s__M0108 sp019136395",
                "ani": 77.3555,
                "matched_fragments": 147,
                "total_fragments": 1288,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__M0108",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016583835.1",
                "gtdb_species": "s__Thiococcus pfennigii",
                "ani": 77.2053,
                "matched_fragments": 182,
                "total_fragments": 1288,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "98.97",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000327045.1",
                "gtdb_species": "s__Thioflavicoccus mobilis",
                "ani": 76.9977,
                "matched_fragments": 170,
                "total_fragments": 1288,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thioflavicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016938795.1",
                "gtdb_species": "s__Marichromatium sp016938795",
                "ani": 76.9965,
                "matched_fragments": 85,
                "total_fragments": 1288,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Marichromatium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_006227775.1",
                "gtdb_species": "s__M0108 sp006227775",
                "ani": 76.9581,
                "matched_fragments": 125,
                "total_fragments": 1288,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__M0108",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001499735.1",
                "gtdb_species": "s__Thiocapsa sp001499735",
                "ani": 76.9251,
                "matched_fragments": 157,
                "total_fragments": 1288,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiocapsa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016583575.1",
                "gtdb_species": "s__Thiocystis violacea",
                "ani": 76.8956,
                "matched_fragments": 176,
                "total_fragments": 1288,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiocystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009928645.1",
                "gtdb_species": "s__M0108 sp009928645",
                "ani": 76.8954,
                "matched_fragments": 136,
                "total_fragments": 1288,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__M0108",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003634315.1",
                "gtdb_species": "s__Thiocapsa rosea",
                "ani": 76.8133,
                "matched_fragments": 149,
                "total_fragments": 1288,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiocapsa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001469165.1",
                "gtdb_species": "s__Thiohalocapsa sp001469165",
                "ani": 76.7701,
                "matched_fragments": 183,
                "total_fragments": 1288,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiohalocapsa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903828115.1",
                "gtdb_species": "s__Thiodictyon sp903828115",
                "ani": 76.7598,
                "matched_fragments": 164,
                "total_fragments": 1288,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiodictyon",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018399035.1",
                "gtdb_species": "s__Thiocapsa sp018399035",
                "ani": 76.7214,
                "matched_fragments": 159,
                "total_fragments": 1288,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thiocapsa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.92",
                "min_intra_species_ani": "99.89",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_012276755.1",
                "gtdb_species": "s__Marichromatium bheemlicum",
                "ani": 76.6148,
                "matched_fragments": 174,
                "total_fragments": 1288,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Marichromatium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.061,
        "cell_length": 0.291,
        "doubling_h": null,
        "growth_tmp": 27.411,
        "optimum_tmp": 29.481,
        "optimum_ph": 7.475,
        "genome_size": 4474068.505,
        "gc_content": 60.319,
        "coding_genes": 3685.6,
        "rRNA16S_genes": 2.25,
        "tRNA_genes": 49.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.851,
        "range_salinity": 1.0,
        "facultative_respiration": 0.076,
        "anaerobic_respiration": 0.641,
        "aerobic_respiration": 0.282,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.642,
        "coccus_cell_shape": 0.357,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Chromatiales",
        "f__Chromatiaceae",
        "g__Thiosymbion",
        "s__Thiosymbion sp022340195"
    ],
    "_genome_taxon": [
        "Chromatiaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Chromatiales",
        "f__Chromatiaceae",
        "g__Thiosymbion",
        "s__Thiosymbion sp022340195",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Chromatiales",
        "Chromatiaceae",
        "Thiosymbion",
        "Thiosymbion",
        "sp022340195"
    ],
    "_meo": [
        {
            "id": "MEO_0000055",
            "label": "rhizosphere"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}