{ "type": "genome", "identifier": "GCA_022340405.1", "organism": "Desulfobacteraceae bacterium", "title": "Desulfobacteraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Marine Biological Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022340405.1", "bioproject": "PRJNA757271", "biosample": "SAMN20958552", "wgs_master": "JAJDOA000000000.1", "refseq_category": "na", "taxid": "2049433", "species_taxid": "2049433", "organism_name": "Desulfobacteraceae bacterium", "infraspecific_name": "", "isolate": "ALSabin.42", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/17", "asm_name": "ASM2234040v1", "submitter": "Marine Biological Laboratory", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/340/405/GCA_022340405.1_ASM2234040v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-17", "dateModified": "2022-02-17", "datePublished": "2022-02-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfobacteraceae bacterium" ], "sample_taxid": [ "2049433" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Alabama" ], "sample_host_location_id": [], "data_size": "1.135 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4001710", "Number of Sequences": "375", "Longest Sequences (bp)": "42226", "N50 (bp)": "13947", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.8", "Number of CDSs": "3226", "Average Protein Length": "319.8", "Coding Ratio (%)": "77.3", "Number of rRNAs": "0", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfosarcina widdelii", "strain": "strain=PP31", "accession": "GCA_009688965.1", "taxid": 947919, "species_taxid": 947919, "relation_to_type": "type", "validated": true, "ani": 76.775, "matched_fragments": 143, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfatitalea tepidiphila", "strain": "strain=S28bF", "accession": "GCA_001293685.1", "taxid": 1185843, "species_taxid": 1185843, "relation_to_type": "type", "validated": true, "ani": 76.556, "matched_fragments": 94, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfosarcina alkanivorans", "strain": "strain=PL12", "accession": "GCA_009688945.1", "taxid": 571177, "species_taxid": 571177, "relation_to_type": "type", "validated": true, "ani": 76.4415, "matched_fragments": 136, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfosudis oleivorans", "strain": "strain=Hxd3", "accession": "GCA_000018405.1", "taxid": 181663, "species_taxid": 181663, "relation_to_type": "type", "validated": true, "ani": 76.2764, "matched_fragments": 61, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfatibacillum alkenivorans", "strain": "strain=DSM 16219", "accession": "GCA_900142135.1", "taxid": 259354, "species_taxid": 259354, "relation_to_type": "type", "validated": true, "ani": 76.1983, "matched_fragments": 54, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfosarcina ovata subsp. ovata", "strain": "strain=oXyS1", "accession": "GCA_009689005.1", 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340467, "relation_to_type": "type", "validated": true, "ani": 75.8982, "matched_fragments": 53, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 0.46, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002327445.1", "gtdb_species": "s__UBA2174 sp002327445", "ani": 76.9108, "matched_fragments": 110, "total_fragments": 1165, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA2174;g__UBA2174", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_011390985.1", "gtdb_species": "s__JAABRJ01 sp011390985", "ani": 76.8163, "matched_fragments": 72, "total_fragments": 1165, "gtdb_taxonomy": 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