{ "type": "genome", "identifier": "GCA_022360285.1", "organism": "Holophagales bacterium", "title": "Holophagales bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Konstanz", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022360285.1", "bioproject": "PRJNA757245", "biosample": "SAMN22830503", "wgs_master": "JAKSDF000000000.1", "refseq_category": "na", "taxid": "2478486", "species_taxid": "2478486", "organism_name": "Holophagales bacterium", "infraspecific_name": "", "isolate": "MAG.55", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/22", "asm_name": "ASM2236028v1", "submitter": "University of Konstanz", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/360/285/GCA_022360285.1_ASM2236028v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-22", "dateModified": "2022-02-22", "datePublished": "2022-02-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Holophagales bacterium" ], "sample_taxid": [ "2478486" ], "sample_host_organism": [ "coral" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Saudi Arabia: Abo Shoosha reef" ], "sample_host_location_id": [], "data_size": "2.745 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.29, "contamination": 18.23, "strain_heterogeneity": 11.11, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "9864823", "Number of Sequences": "2905", "Longest Sequences (bp)": "38276", "N50 (bp)": "4295", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.1", "Number of CDSs": "4843", "Average Protein Length": "324.3", "Coding Ratio (%)": "47.8", "Number of rRNAs": "1", "Number of tRNAs": "51", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Calidithermus roseus", "strain": "strain=NBRC 110900", "accession": "GCA_003574095.1", "taxid": 1644118, "species_taxid": 1644118, "relation_to_type": "type", "validated": true, "ani": 74.9503, "matched_fragments": 50, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes roseus", "strain": "strain=DSM 5909", "accession": "GCA_003258865.1", "taxid": 29409, "species_taxid": 29409, "relation_to_type": "type", "validated": true, "ani": 74.8166, "matched_fragments": 89, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteitalea pratensis", "strain": "strain=DSM 100886; HEG_-6_39", "accession": "GCA_001618865.1", "taxid": 1855912, "species_taxid": 1855912, "relation_to_type": "type", "validated": true, "ani": 74.8152, "matched_fragments": 68, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermopolyspora flexuosa", "strain": "strain=DSM 43186", "accession": "GCA_006716785.1", "taxid": 103836, "species_taxid": 103836, "relation_to_type": "type", "validated": true, "ani": 74.7515, "matched_fragments": 134, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanithermus profundus", "strain": "strain=DSM 14977", "accession": "GCA_000183745.1", "taxid": 187137, "species_taxid": 187137, "relation_to_type": "type", "validated": true, "ani": 74.7302, "matched_fragments": 56, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ventosae", "strain": "strain=CECT 5797", "accession": "GCA_004363555.1", "taxid": 229007, "species_taxid": 229007, "relation_to_type": "type", "validated": true, "ani": 74.7233, "matched_fragments": 73, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=YIM 77520", "accession": "GCA_008033455.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 74.7198, "matched_fragments": 81, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobrevis pamukkalensis", "strain": "strain=PK2", "accession": "GCA_001720135.1", "taxid": 1439726, "species_taxid": 1439726, "relation_to_type": "type", "validated": true, "ani": 74.7174, "matched_fragments": 64, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=DSM 25623", "accession": "GCA_003814555.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 74.715, "matched_fragments": 82, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter rhizosphaerae", "strain": "strain=KCTC 52515", "accession": "GCA_010977555.1", "taxid": 2010972, "species_taxid": 2010972, "relation_to_type": "type", "validated": true, "ani": 74.7094, "matched_fragments": 83, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter hibisci", "strain": "strain=KACC 18849", "accession": "GCA_016135805.1", "taxid": 2035993, "species_taxid": 2035993, "relation_to_type": "type", "validated": true, "ani": 74.6694, "matched_fragments": 87, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas suwonensis", "strain": "strain=DSM 17175", "accession": "GCA_010093235.1", "taxid": 314722, "species_taxid": 314722, "relation_to_type": "suspected-type", "validated": true, "ani": 74.6551, "matched_fragments": 66, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobrevis albus", "strain": "strain=L22", "accession": "GCA_015904235.1", "taxid": 2793297, "species_taxid": 2793297, "relation_to_type": "type", "validated": true, "ani": 74.6549, "matched_fragments": 83, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nannocystis exedens", "strain": "strain=DSM 71", "accession": "GCA_002343915.1", "taxid": 54, "species_taxid": 54, "relation_to_type": "type", "validated": true, "ani": 74.6356, "matched_fragments": 251, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus praedator", "strain": "strain=CA031B", "accession": "GCA_003612125.1", "taxid": 2316724, "species_taxid": 2316724, "relation_to_type": "type", "validated": true, "ani": 74.6308, "matched_fragments": 83, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum thermophilum", "strain": "strain=CFH 70021", "accession": "GCA_003130795.1", "taxid": 2202148, "species_taxid": 2202148, "relation_to_type": "type", "validated": true, "ani": 74.6292, "matched_fragments": 111, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lichenis", "strain": "strain=LCR6-01", "accession": "GCA_023218175.1", "taxid": 2306967, "species_taxid": 2306967, "relation_to_type": "type", "validated": true, "ani": 74.6267, "matched_fragments": 139, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nannocystis exedens", "strain": "strain=ATCC 25963", "accession": "GCA_900112715.1", "taxid": 54, "species_taxid": 54, "relation_to_type": "type", "validated": true, "ani": 74.6257, "matched_fragments": 248, 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"strain": "strain=ZKHCc1 1396", "accession": "GCA_014930455.1", "taxid": 2710757, "species_taxid": 2710757, "relation_to_type": "type", "validated": true, "ani": 74.5978, "matched_fragments": 104, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter chinensis", "strain": "strain=TLK-CK17", "accession": "GCA_021725675.1", "taxid": 2912247, "species_taxid": 2912247, "relation_to_type": "type", "validated": true, "ani": 74.5798, "matched_fragments": 60, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium piscinae", "strain": "strain=KCTC 42194", "accession": "GCA_014230355.1", "taxid": 1507448, "species_taxid": 1507448, "relation_to_type": "type", "validated": true, "ani": 74.5659, "matched_fragments": 55, "total_fragments": 1767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": 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