{ "type": "genome", "identifier": "GCA_022360475.1", "organism": "Caulobacterales bacterium", "title": "Caulobacterales bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Konstanz", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022360475.1", "bioproject": "PRJNA757245", "biosample": "SAMN22830490", "wgs_master": "JAKSCS000000000.1", "refseq_category": "na", "taxid": "2282150", "species_taxid": "2282150", "organism_name": "Caulobacterales bacterium", "infraspecific_name": "", "isolate": "MAG.303", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/22", "asm_name": "ASM2236047v1", "submitter": "University of Konstanz", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/360/475/GCA_022360475.1_ASM2236047v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-22", "dateModified": "2022-02-22", "datePublished": "2022-02-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Caulobacterales bacterium" ], "sample_taxid": [ "2282150" ], "sample_host_organism": [ "coral" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Saudi Arabia: Abo Shoosha reef" ], "sample_host_location_id": [], "data_size": "1.013 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.27, "contamination": 0.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3651774", "Number of Sequences": "1130", "Longest Sequences (bp)": "13400", "N50 (bp)": "3795", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.8", "Number of CDSs": "2369", "Average Protein Length": "283.5", "Coding Ratio (%)": "55.2", "Number of rRNAs": "0", "Number of tRNAs": "29", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinicauda algicola", "strain": "strain=RMAR8-3", "accession": "GCA_017161425.1", "taxid": 2029849, "species_taxid": 2029849, "relation_to_type": "type", "validated": true, "ani": 76.2221, "matched_fragments": 100, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda algicola", "strain": "strain=JCM 31718", "accession": "GCA_004793685.1", "taxid": 2029849, "species_taxid": 2029849, "relation_to_type": "type", "validated": true, "ani": 76.1991, "matched_fragments": 99, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Euryhalocaulis caribicus", "strain": "strain=JL2009", "accession": "GCA_000412185.1", "taxid": 1161401, "species_taxid": 1161401, "relation_to_type": "type", "validated": true, "ani": 75.7236, "matched_fragments": 57, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinicauda salina", "strain": "strain=WD6-1", "accession": "GCA_003122085.1", "taxid": 2135793, "species_taxid": 2135793, "relation_to_type": "type", "validated": true, "ani": 75.7025, "matched_fragments": 128, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas lutea", "strain": "strain=NS26", "accession": "GCA_003704105.1", "taxid": 2293980, "species_taxid": 2293980, "relation_to_type": "type", "validated": true, "ani": 75.573, "matched_fragments": 53, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium glaciei", "strain": "strain=20VBR1", "accession": "GCA_016772415.2", "taxid": 2803784, "species_taxid": 2803784, "relation_to_type": "type", "validated": true, "ani": 75.5363, "matched_fragments": 55, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelativorans intermedius", "strain": "strain=LMG 28482", "accession": "GCA_025398255.1", "taxid": 515947, "species_taxid": 515947, "relation_to_type": "type", "validated": true, "ani": 75.4575, "matched_fragments": 54, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium zucineum", "strain": "strain=HLK1", "accession": "GCA_000017265.1", "taxid": 284016, "species_taxid": 284016, "relation_to_type": "type", "validated": true, "ani": 75.4086, "matched_fragments": 102, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium soli", "strain": "strain=LX32", "accession": "GCA_003254475.1", "taxid": 2170551, "species_taxid": 2170551, "relation_to_type": "type", "validated": true, "ani": 75.3915, "matched_fragments": 89, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus composti", "strain": "strain=CGMCC 1.15283", "accession": "GCA_014641535.1", "taxid": 1743235, "species_taxid": 1743235, "relation_to_type": "type", "validated": true, "ani": 75.3429, "matched_fragments": 62, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus composti", "strain": "strain=DSM 101465", "accession": "GCA_018398355.1", "taxid": 1743235, "species_taxid": 1743235, "relation_to_type": "type", "validated": true, "ani": 75.3429, "matched_fragments": 62, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus composti", "strain": "strain=DSM 101465", "accession": "GCA_014201415.1", "taxid": 1743235, "species_taxid": 1743235, "relation_to_type": "type", "validated": true, "ani": 75.3306, "matched_fragments": 63, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas viscosa", "strain": "strain=CGMCC 1.10683", "accession": "GCA_900116065.1", "taxid": 871741, "species_taxid": 871741, "relation_to_type": "type", "validated": true, "ani": 75.2515, "matched_fragments": 76, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiella sonneratiae", "strain": "strain=MQZ13P-4", "accession": "GCA_017353515.1", "taxid": 2816856, "species_taxid": 2816856, "relation_to_type": "type", "validated": true, "ani": 75.2441, "matched_fragments": 88, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya koreensis", "strain": "strain=Jip08", "accession": "GCA_023016525.1", "taxid": 266121, "species_taxid": 266121, "relation_to_type": "type", "validated": true, "ani": 75.2393, "matched_fragments": 73, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas albigilva", "strain": "strain=KEME 9005-016", "accession": "GCA_023503965.1", "taxid": 1312364, "species_taxid": 1312364, "relation_to_type": "type", "validated": true, "ani": 75.1869, "matched_fragments": 70, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 75.0425, "matched_fragments": 72, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pleomorphomonas koreensis", "strain": "strain=DSM 23070", "accession": "GCA_000425185.1", "taxid": 257440, "species_taxid": 257440, "relation_to_type": "type", "validated": true, "ani": 74.9993, "matched_fragments": 77, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 74.9956, "matched_fragments": 136, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acuticoccus sediminis", "strain": "strain=PTG4-2", "accession": "GCA_003258595.1", "taxid": 2184697, "species_taxid": 2184697, "relation_to_type": "type", "validated": true, "ani": 74.9828, "matched_fragments": 110, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=MIMD6", "accession": "GCA_003574465.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 74.9779, "matched_fragments": 123, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus pinisoli", "strain": "strain=XZZS9", "accession": "GCA_018413645.1", "taxid": 2835040, "species_taxid": 2835040, "relation_to_type": "type", "validated": true, "ani": 74.964, "matched_fragments": 58, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.27, "contamination": 0.38, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000152745.1", "gtdb_species": "s__Oceanicaulis sp000152745", "ani": 75.9699, "matched_fragments": 59, "total_fragments": 623, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Oceanicaulis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.46", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_016124675.1", "gtdb_species": "s__Oceanicaulis sp016124675", "ani": 75.894, "matched_fragments": 82, 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