{ "type": "genome", "identifier": "GCA_022360995.1", "organism": "Desulfovibrionales bacterium", "title": "Desulfovibrionales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Konstanz", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022360995.1", "bioproject": "PRJNA757245", "biosample": "SAMN22830463", "wgs_master": "JAKSBR000000000.1", "refseq_category": "na", "taxid": "2448050", "species_taxid": "2448050", "organism_name": "Desulfovibrionales bacterium", "infraspecific_name": "", "isolate": "MAG.202", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/22", "asm_name": "ASM2236099v1", "submitter": "University of Konstanz", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/360/995/GCA_022360995.1_ASM2236099v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-22", "dateModified": "2022-02-22", "datePublished": "2022-02-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfovibrionales bacterium" ], "sample_taxid": [ "2448050" ], "sample_host_organism": [ "coral" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Saudi Arabia: Abo Shoosha reef" ], "sample_host_location_id": [], "data_size": "1.355 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 49.31, "contamination": 11.46, "strain_heterogeneity": 25.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4652975", "Number of Sequences": "988", "Longest Sequences (bp)": "87920", "N50 (bp)": "20325", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.9", "Number of CDSs": "3342", "Average Protein Length": "304.7", "Coding Ratio (%)": "65.6", "Number of rRNAs": "3", "Number of tRNAs": "75", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halodesulfovibrio aestuarii", "strain": "strain=DSM 17919", "accession": "GCA_900142115.1", "taxid": 126333, "species_taxid": 126333, "relation_to_type": "type", "validated": true, "ani": 79.0657, "matched_fragments": 355, "total_fragments": 1048, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halodesulfovibrio spirochaetisodalis", "strain": "strain=JC271", "accession": "GCA_001672295.1", "taxid": 1560234, "species_taxid": 1560234, "relation_to_type": "type", "validated": true, "ani": 78.9383, "matched_fragments": 375, "total_fragments": 1048, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio subterraneus", "strain": "strain=HN2", "accession": "GCA_013340285.1", "taxid": 2718620, "species_taxid": 2718620, "relation_to_type": "type", "validated": true, "ani": 76.1934, "matched_fragments": 74, "total_fragments": 1048, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 49.31, "contamination": 11.46, "strain_heterogeneity": 25.0 }, "gtdb_result": [ { "accession": "GCA_015482765.1", "gtdb_species": "s__Halodesulfovibrio sp015482765", "ani": 79.2547, "matched_fragments": 371, "total_fragments": 1048, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Halodesulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900129975.1", "gtdb_species": "s__Halodesulfovibrio marinisediminis", "ani": 79.2018, "matched_fragments": 383, "total_fragments": 1048, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Halodesulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000384815.1", "gtdb_species": "s__Halodesulfovibrio aestuarii", "ani": 79.0634, "matched_fragments": 356, "total_fragments": 1048, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Halodesulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.51", "min_intra_species_ani": "99.03", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001672295.1", "gtdb_species": "s__Halodesulfovibrio spirochaetisodalis", "ani": 78.9424, "matched_fragments": 374, "total_fragments": 1048, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Halodesulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009914765.1", "gtdb_species": "s__Halodesulfovibrio sp009914765", "ani": 78.7829, "matched_fragments": 366, "total_fragments": 1048, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Halodesulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013340285.1", "gtdb_species": "s__Halodesulfovibrio subterraneus", "ani": 76.1954, "matched_fragments": 71, "total_fragments": 1048, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Halodesulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.25, "cell_length": 0.327, "doubling_h": 0.9, "growth_tmp": 33.544, "optimum_tmp": 35.546, "optimum_ph": 7.251, "genome_size": 3670229.763, "gc_content": 56.663, "coding_genes": 3092.407, "rRNA16S_genes": 3.006, "tRNA_genes": 58.868, "gram_stain": 0.0, "sporulation": 0.019, "motility": 0.946, "range_salinity": 0.75, "facultative_respiration": 0.015, "anaerobic_respiration": 0.984, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.96, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.04, "bacillus_cell_shape": 0.545, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.431, "spiral_cell_shape": 0.022 }, "_gtdb_taxon": [ "d__Bacteria", "p__Desulfobacterota", "c__Desulfovibrionia", "o__Desulfovibrionales", "f__Desulfovibrionaceae", "g__Halodesulfovibrio", "s__" ], "_genome_taxon": [ "Desulfovibrionales", "bacterium", "d__Bacteria", "p__Desulfobacterota", "c__Desulfovibrionia", "o__Desulfovibrionales", "f__Desulfovibrionaceae", "g__Halodesulfovibrio", "s__", "Bacteria", "Desulfobacterota", "Desulfovibrionia", "Desulfovibrionales", "Desulfovibrionaceae", "Halodesulfovibrio", "s", "", "" ], "_meo": [ { "id": "MEO_0000094", "label": "coral reef" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }