{
    "type": "genome",
    "identifier": "GCA_022402525.1",
    "organism": "Thermosynechococcaceae cyanobacterium MS004",
    "title": "Thermosynechococcaceae cyanobacterium MS004",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Southern California",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022402525.1",
        "bioproject": "PRJNA757720",
        "biosample": "SAMN22081052",
        "wgs_master": "JAKRSB000000000.1",
        "refseq_category": "na",
        "taxid": "2881380",
        "species_taxid": "2881380",
        "organism_name": "Thermosynechococcaceae cyanobacterium MS004",
        "infraspecific_name": "",
        "isolate": "MS004",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/02/27",
        "asm_name": "ASM2240252v1",
        "submitter": "University of Southern California",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/402/525/GCA_022402525.1_ASM2240252v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-02-27",
    "dateModified": "2022-02-27",
    "datePublished": "2022-02-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermosynechococcaceae cyanobacterium MS004"
        ],
        "sample_taxid": [
            "2881380"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: California, Castaic Lake"
        ],
        "sample_host_location_id": [],
        "data_size": "1.411 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4931563",
        "Number of Sequences": "150",
        "Longest Sequences (bp)": "195144",
        "N50 (bp)": "89601",
        "Gap Ratio (%)": "0.006286",
        "GCcontent (%)": "51.0",
        "Number of CDSs": "4292",
        "Average Protein Length": "306.6",
        "Coding Ratio (%)": "80.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Neosynechococcus sphagnicola",
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                "accession": "GCA_000775285.1",
                "taxid": 1501145,
                "species_taxid": 1501145,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 56,
                "total_fragments": 1568,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptothermofonsia sichuanensis",
                "strain": "strain=PKUAC-SCTE412",
                "accession": "GCA_019891175.1",
                "taxid": 2917832,
                "species_taxid": 2917832,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8559,
                "matched_fragments": 55,
                "total_fragments": 1568,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acaryochloris thomasi",
                "strain": "strain=RCC1774",
                "accession": "GCA_003231495.1",
                "taxid": 2929456,
                "species_taxid": 2929456,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3121,
                "matched_fragments": 54,
                "total_fragments": 1568,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermoleptolyngbya sichuanensis",
                "strain": "strain=PKUAC-SCTA183",
                "accession": "GCA_013177315.1",
                "taxid": 2885951,
                "species_taxid": 2885951,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.186,
                "matched_fragments": 70,
                "total_fragments": 1568,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "gtdb_species": "s__JAAURS01 sp012032135",
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                "matched_fragments": 156,
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Thermosynechococcales;f__Thermosynechococcaceae;g__JAAURS01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016888135.1",
                "gtdb_species": "s__RECH01 sp016888135",
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                "matched_fragments": 82,
                "total_fragments": 1568,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Elainellales;f__Elainellaceae;g__RECH01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.61",
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                "mean_intra_species_af": "0.91",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_016403105.1",
                "gtdb_species": "s__Nodosilinea sp016403105",
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                "total_fragments": 1568,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Phormidesmiales;f__Phormidesmiaceae;g__Nodosilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_003017855.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Phormidesmiales;f__Phormidesmiaceae;g__Nodosilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.92",
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                "mean_intra_species_af": "0.94",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_016208305.1",
                "gtdb_species": "s__JAAUOQ01 sp016208305",
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                "matched_fragments": 80,
                "total_fragments": 1568,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Elainellales;f__Elainellaceae;g__JAAUOQ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000309385.1",
                "gtdb_species": "s__Nodosilinea nodulosa",
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Phormidesmiales;f__Phormidesmiaceae;g__Nodosilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCF_000817745.2",
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                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCF_015207525.1",
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                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_014695325.1",
                "gtdb_species": "s__Leptolyngbya_A sp014695325",
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                "total_fragments": 1568,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Elainellales;f__Elainellaceae;g__Leptolyngbya_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.45",
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            },
            {
                "accession": "GCF_000317045.1",
                "gtdb_species": "s__PCC-7407 sp000317045",
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-7407;f__PCC-7407;g__PCC-7407",
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            },
            {
                "accession": "GCF_001939115.1",
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            },
            {
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                "status": "-"
            },
            {
                "accession": "GCF_003231495.1",
                "gtdb_species": "s__RCC1774 sp003231495",
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Thermosynechococcales;f__Thermosynechococcaceae;g__RCC1774",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_013177315.1",
                "gtdb_species": "s__O-77 sp013177315",
                "ani": 75.175,
                "matched_fragments": 71,
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                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Elainellales;f__Elainellaceae;g__O-77",
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                "mean_intra_species_ani": "97.76",
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                "num_clustered_genomes": 3,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
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        "f__Thermosynechococcaceae",
        "g__JAAURS01",
        "s__JAAURS01 sp022402525"
    ],
    "_genome_taxon": [
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        "cyanobacterium",
        "MS004",
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Thermosynechococcales",
        "f__Thermosynechococcaceae",
        "g__JAAURS01",
        "s__JAAURS01 sp022402525",
        "Bacteria",
        "Cyanobacteriota",
        "Cyanobacteriia",
        "Thermosynechococcales",
        "Thermosynechococcaceae",
        "JAAURS01",
        "JAAURS01",
        "sp022402525"
    ],
    "_meo": [
        {
            "id": "MEO_0000038",
            "label": "freshwater"
        },
        {
            "id": "MEO_0000024",
            "label": "lake"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}