{ "type": "genome", "identifier": "GCA_022425165.1", "organism": "Flavobacteriaceae bacterium", "title": "Flavobacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022425165.1", "bioproject": "PRJNA801081", "biosample": "SAMN25339205", "wgs_master": "JAKMGA000000000.1", "refseq_category": "na", "taxid": "1871037", "species_taxid": "1871037", "organism_name": "Flavobacteriaceae bacterium", "infraspecific_name": "", "isolate": "MOX_bin86", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/28", "asm_name": "ASM2242516v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/425/165/GCA_022425165.1_ASM2242516v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-28", "dateModified": "2022-02-28", "datePublished": "2022-02-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacteriaceae bacterium" ], "sample_taxid": [ "1871037" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Port Phillip Bay" ], "sample_host_location_id": [], "data_size": "0.228 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 72.69, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "818136", "Number of Sequences": "177", "Longest Sequences (bp)": "16903", "N50 (bp)": "5137", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.7", "Number of CDSs": "614", "Average Protein Length": "307.1", "Coding Ratio (%)": "69.1", "Number of rRNAs": "0", "Number of tRNAs": "12", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 72.69, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_004214015.1", "gtdb_species": "s__MED-G11 sp004214015", "ani": 97.1413, "matched_fragments": 127, "total_fragments": 172, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MED-G11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.90", "min_intra_species_ani": "97.77", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.80", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCA_016777325.1", "gtdb_species": "s__MED-G11 sp016777325", "ani": 91.927, 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MED-G11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "98.35", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.79", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_014239665.1", "gtdb_species": "s__MED-G11 sp014239665", "ani": 83.6397, "matched_fragments": 131, "total_fragments": 172, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MED-G11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.49", "min_intra_species_ani": "96.27", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.77", "num_clustered_genomes": 10, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.335, "cell_length": 0.307, "doubling_h": 1.285, "growth_tmp": 26.48, "optimum_tmp": 26.613, "optimum_ph": 7.273, "genome_size": 3914984.758, 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"Flavobacteriaceae", "Marisimplicoccus", "Marisimplicoccus", "sp004214015" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }