{ "type": "genome", "identifier": "GCA_022425205.1", "organism": "Rubripirellula sp.", "title": "Rubripirellula sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022425205.1", "bioproject": "PRJNA801081", "biosample": "SAMN25339204", "wgs_master": "JAKMFZ000000000.1", "refseq_category": "na", "taxid": "1973111", "species_taxid": "1973111", "organism_name": "Rubripirellula sp.", "infraspecific_name": "", "isolate": "MOX_bin85", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/28", "asm_name": "ASM2242520v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/425/205/GCA_022425205.1_ASM2242520v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-28", "dateModified": "2022-02-28", "datePublished": "2022-02-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Rubripirellula sp." ], "sample_taxid": [ "1973111" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Port Phillip Bay" ], "sample_host_location_id": [], "data_size": "1.498 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.91, "contamination": 5.3, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5166929", "Number of Sequences": "1115", "Longest Sequences (bp)": "25285", "N50 (bp)": "5135", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.5", "Number of CDSs": "2781", "Average Protein Length": "339.5", "Coding Ratio (%)": "54.8", "Number of rRNAs": "0", "Number of tRNAs": "25", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 83.91, "contamination": 5.3, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002690925.1", "gtdb_species": "s__Rubripirellula sp002690925", "ani": 99.261, "matched_fragments": 990, "total_fragments": 1117, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rubripirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_002689655.1", "gtdb_species": "s__Rubripirellula sp002689655", "ani": 85.3319, "matched_fragments": 941, "total_fragments": 1117, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rubripirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002712845.1", "gtdb_species": "s__Rubripirellula sp002712845", "ani": 84.9458, "matched_fragments": 391, "total_fragments": 1117, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rubripirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003513555.1", "gtdb_species": "s__Rubripirellula sp003513555", "ani": 82.7161, "matched_fragments": 832, "total_fragments": 1117, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rubripirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002862205.1", "gtdb_species": "s__Rubripirellula sp002862205", "ani": 80.6408, "matched_fragments": 578, "total_fragments": 1117, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rubripirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012270065.1", "gtdb_species": "s__Rubripirellula sp012270065", "ani": 78.0498, "matched_fragments": 256, "total_fragments": 1117, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rubripirellula", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.24", "min_intra_species_ani": "98.24", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": 25.0, "optimum_ph": null, "genome_size": 6578739.0, "gc_content": 54.108, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Planctomycetota", "c__Planctomycetia", "o__Pirellulales", "f__Pirellulaceae", "g__Rubripirellula", "s__Rubripirellula sp002690925" ], "_genome_taxon": [ "Rubripirellula", "sp.", "d__Bacteria", "p__Planctomycetota", "c__Planctomycetia", "o__Pirellulales", "f__Pirellulaceae", "g__Rubripirellula", "s__Rubripirellula sp002690925", "Bacteria", "Planctomycetota", "Planctomycetia", "Pirellulales", "Pirellulaceae", "Rubripirellula", "Rubripirellula", "sp002690925" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }