{
    "type": "genome",
    "identifier": "GCA_022425665.1",
    "organism": "Alphaproteobacteria bacterium",
    "title": "Alphaproteobacteria bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Monash University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022425665.1",
        "bioproject": "PRJNA801081",
        "biosample": "SAMN25339179",
        "wgs_master": "JAKMFA000000000.1",
        "refseq_category": "na",
        "taxid": "1913988",
        "species_taxid": "1913988",
        "organism_name": "Alphaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "MOX_bin60",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/02/28",
        "asm_name": "ASM2242566v1",
        "submitter": "Monash University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/425/665/GCA_022425665.1_ASM2242566v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-02-28",
    "dateModified": "2022-02-28",
    "datePublished": "2022-02-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alphaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "1913988"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Australia: Port Phillip Bay"
        ],
        "sample_host_location_id": [],
        "data_size": "0.381 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 68.23,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1350527",
        "Number of Sequences": "280",
        "Longest Sequences (bp)": "22324",
        "N50 (bp)": "5615",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.4",
        "Number of CDSs": "1034",
        "Average Protein Length": "300.6",
        "Coding Ratio (%)": "69.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "23",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 68.23,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900197605.1",
                "gtdb_species": "s__UBA8337 sp900197605",
                "ani": 96.5284,
                "matched_fragments": 252,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Parvibaculales;f__RS24;g__UBA8337",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.88",
                "min_intra_species_ani": "95.59",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCA_009920875.1",
                "gtdb_species": "s__UBA8337 sp009920875",
                "ani": 82.0047,
                "matched_fragments": 180,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Parvibaculales;f__RS24;g__UBA8337",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.55",
                "min_intra_species_ani": "97.55",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016779015.1",
                "gtdb_species": "s__UBA8337 sp016779015",
                "ani": 81.5161,
                "matched_fragments": 157,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Parvibaculales;f__RS24;g__UBA8337",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002721725.1",
                "gtdb_species": "s__UBA8337 sp002721725",
                "ani": 81.0328,
                "matched_fragments": 214,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Parvibaculales;f__RS24;g__UBA8337",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.29",
                "min_intra_species_ani": "99.29",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018673175.1",
                "gtdb_species": "s__UBA8337 sp018673175",
                "ani": 78.0877,
                "matched_fragments": 136,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Parvibaculales;f__RS24;g__UBA8337",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018660505.1",
                "gtdb_species": "s__UBA8337 sp018660505",
                "ani": 78.0542,
                "matched_fragments": 149,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Parvibaculales;f__RS24;g__UBA8337",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.75",
                "min_intra_species_ani": "99.71",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002689195.1",
                "gtdb_species": "s__UBA7378 sp002689195",
                "ani": 77.3135,
                "matched_fragments": 78,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Parvibaculales;f__RS24;g__UBA7378",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.73",
                "min_intra_species_ani": "98.05",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002469805.1",
                "gtdb_species": "s__UBA7378 sp002469805",
                "ani": 76.2157,
                "matched_fragments": 51,
                "total_fragments": 292,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Parvibaculales;f__RS24;g__UBA7378",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.20",
                "min_intra_species_ani": "98.74",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Parvibaculales",
        "f__RS24",
        "g__UBA8337",
        "s__UBA8337 sp900197605"
    ],
    "_genome_taxon": [
        "Alphaproteobacteria",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Parvibaculales",
        "f__RS24",
        "g__UBA8337",
        "s__UBA8337 sp900197605",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Parvibaculales",
        "RS24",
        "UBA8337",
        "UBA8337",
        "sp900197605"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}