{
    "type": "genome",
    "identifier": "GCA_022425745.1",
    "organism": "Rubripirellula sp.",
    "title": "Rubripirellula sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Monash University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022425745.1",
        "bioproject": "PRJNA801081",
        "biosample": "SAMN25339175",
        "wgs_master": "JAKMEW000000000.1",
        "refseq_category": "na",
        "taxid": "1973111",
        "species_taxid": "1973111",
        "organism_name": "Rubripirellula sp.",
        "infraspecific_name": "",
        "isolate": "MOX_bin56",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/02/28",
        "asm_name": "ASM2242574v1",
        "submitter": "Monash University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/425/745/GCA_022425745.1_ASM2242574v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-02-28",
    "dateModified": "2022-02-28",
    "datePublished": "2022-02-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rubripirellula sp."
        ],
        "sample_taxid": [
            "1973111"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Australia: Port Phillip Bay"
        ],
        "sample_host_location_id": [],
        "data_size": "1.458 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 6.02,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5059841",
        "Number of Sequences": "549",
        "Longest Sequences (bp)": "54837",
        "N50 (bp)": "13063",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.2",
        "Number of CDSs": "3133",
        "Average Protein Length": "382.1",
        "Coding Ratio (%)": "71.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Rubripirellula lacrimiformis",
                "strain": "strain=K22.7",
                "accession": "GCA_007741535.1",
                "taxid": 1930273,
                "species_taxid": 1930273,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2048,
                "matched_fragments": 57,
                "total_fragments": 1420,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rubripirellula obstinata",
                "strain": "strain=LF1",
                "accession": "GCA_008374075.1",
                "taxid": 406547,
                "species_taxid": 406547,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7491,
                "matched_fragments": 51,
                "total_fragments": 1420,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseiconus lacunae",
                "strain": "strain=JC635",
                "accession": "GCA_008312935.1",
                "taxid": 2605694,
                "species_taxid": 2605694,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3968,
                "matched_fragments": 50,
                "total_fragments": 1420,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 6.02,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016779185.1",
                "gtdb_species": "s__Rubripirellula sp016779185",
                "ani": 77.2338,
                "matched_fragments": 143,
                "total_fragments": 1420,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rubripirellula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007741535.1",
                "gtdb_species": "s__Rubripirellula sp007741535",
                "ani": 76.2048,
                "matched_fragments": 57,
                "total_fragments": 1420,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Rubripirellula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007745635.1",
                "gtdb_species": "s__Stieleria sp002167455",
                "ani": 75.7001,
                "matched_fragments": 56,
                "total_fragments": 1420,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Stieleria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.72",
                "min_intra_species_ani": "98.72",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 25.0,
        "optimum_ph": null,
        "genome_size": 6578739.0,
        "gc_content": 54.108,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Planctomycetota",
        "c__Planctomycetia",
        "o__Pirellulales",
        "f__Pirellulaceae",
        "g__Rubripirellula",
        "s__Rubripirellula sp022425745"
    ],
    "_genome_taxon": [
        "Rubripirellula",
        "sp.",
        "d__Bacteria",
        "p__Planctomycetota",
        "c__Planctomycetia",
        "o__Pirellulales",
        "f__Pirellulaceae",
        "g__Rubripirellula",
        "s__Rubripirellula sp022425745",
        "Bacteria",
        "Planctomycetota",
        "Planctomycetia",
        "Pirellulales",
        "Pirellulaceae",
        "Rubripirellula",
        "Rubripirellula",
        "sp022425745"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}