{ "type": "genome", "identifier": "GCA_022448445.1", "organism": "Alteromonas sp.", "title": "Alteromonas sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "SCOPE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022448445.1", "bioproject": "PRJNA358725", "biosample": "SAMN25998914", "wgs_master": "JAKVAL000000000.1", "refseq_category": "na", "taxid": "232", "species_taxid": "232", "organism_name": "Alteromonas sp.", "infraspecific_name": "", "isolate": "ALOHA_ZT_1", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/02", "asm_name": "ASM2244844v1", "submitter": "SCOPE", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/448/445/GCA_022448445.1_ASM2244844v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-02", "dateModified": "2022-03-02", "datePublished": "2022-03-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteromonas sp." ], "sample_taxid": [ "232" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: North Pacific Gyre, Station ALOHA" ], "sample_host_location_id": [], "data_size": "1.395 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4850440", "Number of Sequences": "270", "Longest Sequences (bp)": "198280", "N50 (bp)": "57564", "Gap Ratio (%)": "0.087662", "GCcontent (%)": "44.8", "Number of CDSs": "3961", "Average Protein Length": "333.5", "Coding Ratio (%)": "81.7", "Number of rRNAs": "8", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alteromonas macleodii", "strain": "strain=ATCC 27126", "accession": "GCA_000172635.2", "taxid": 28108, "species_taxid": 28108, "relation_to_type": "type", "validated": true, "ani": 97.7938, "matched_fragments": 1288, "total_fragments": 1460, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alteromonas abrolhosensis", "strain": "strain=PEL67E", "accession": "GCA_001953635.1", "taxid": 1892904, "species_taxid": 1892904, "relation_to_type": "type", "validated": true, "ani": 90.4504, "matched_fragments": 1171, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas portus", "strain": "strain=HB161718", "accession": "GCA_005117025.1", "taxid": 2565549, "species_taxid": 2565549, "relation_to_type": "type", "validated": true, "ani": 88.4737, "matched_fragments": 1045, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas gracilis", "strain": "strain=9a2", "accession": "GCA_002993325.1", "taxid": 1479524, "species_taxid": 1479524, "relation_to_type": "type", "validated": true, "ani": 83.8216, "matched_fragments": 901, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas mediterranea", "strain": "strain=DE", "accession": "GCA_000020585.3", "taxid": 314275, "species_taxid": 314275, "relation_to_type": "type", "validated": true, "ani": 83.7572, "matched_fragments": 915, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas australica", "strain": "strain=H 17", "accession": "GCA_000730385.1", "taxid": 589873, "species_taxid": 589873, "relation_to_type": "type", "validated": true, "ani": 80.55, "matched_fragments": 409, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas oceanisediminis", "strain": "strain=SM 2104", "accession": "GCA_018474025.1", "taxid": 2836180, "species_taxid": 2836180, "relation_to_type": "type", "validated": true, "ani": 78.7368, "matched_fragments": 92, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrosphaera ytuae", "strain": "strain=MTZ26", "accession": "GCA_017638545.1", "taxid": 2820710, "species_taxid": 2820710, "relation_to_type": "type", "validated": true, "ani": 77.5935, "matched_fragments": 52, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella nanhaiensis", "strain": "strain=NR704-98", "accession": "GCA_019457885.1", "taxid": 2864872, "species_taxid": 2864872, "relation_to_type": "type", "validated": true, "ani": 76.1113, "matched_fragments": 52, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_000172635.2", "gtdb_species": "s__Alteromonas macleodii", "ani": 97.7938, "matched_fragments": 1288, "total_fragments": 1460, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.79", "min_intra_species_ani": "96.10", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.76", "num_clustered_genomes": 56, "status": "conclusive" }, { "accession": "GCF_000808575.1", "gtdb_species": "s__Alteromonas marina", "ani": 92.5838, "matched_fragments": 1092, "total_fragments": 1460, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001953635.1", "gtdb_species": "s__Alteromonas abrolhosensis", "ani": 90.4504, "matched_fragments": 1171, "total_fragments": 1460, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "97.25", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_005117025.1", "gtdb_species": "s__Alteromonas portus", "ani": 88.476, "matched_fragments": 1046, "total_fragments": 1460, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001885075.1", "gtdb_species": "s__Alteromonas sp001885075", "ani": 86.3674, "matched_fragments": 789, "total_fragments": 1460, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_903772925.1", "gtdb_species": "s__Alteromonas macleodii_A", "ani": 85.4505, "matched_fragments": 1000, "total_fragments": 1460, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000597705.1", "gtdb_species": "s__Alteromonas sp000597705", "ani": 84.7179, "matched_fragments": 1042, "total_fragments": 1460, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.20", "min_intra_species_ani": "99.20", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000020585.3", "gtdb_species": "s__Alteromonas mediterranea", "ani": 83.7572, "matched_fragments": 915, "total_fragments": 1460, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.15", "min_intra_species_ani": "97.41", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 24, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.182, "cell_length": 0.24, "doubling_h": null, "growth_tmp": 25.7, "optimum_tmp": 27.222, "optimum_ph": 7.5, "genome_size": 4625601.903, "gc_content": 44.122, "coding_genes": 3905.644, "rRNA16S_genes": 5.0, "tRNA_genes": 61.76, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Enterobacterales", "f__Alteromonadaceae", "g__Alteromonas", "s__Alteromonas macleodii" ], "_genome_taxon": [ "Alteromonas", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Enterobacterales", "f__Alteromonadaceae", "g__Alteromonas", "s__Alteromonas macleodii", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Enterobacterales", "Alteromonadaceae", "Alteromonas", "Alteromonas", "macleodii" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }