{
    "type": "genome",
    "identifier": "GCA_022448875.1",
    "organism": "Rhodobacterales bacterium",
    "title": "Rhodobacterales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "SCOPE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022448875.1",
        "bioproject": "PRJNA352737",
        "biosample": "SAMN25999145",
        "wgs_master": "JAKUTM000000000.1",
        "refseq_category": "na",
        "taxid": "1948890",
        "species_taxid": "1948890",
        "organism_name": "Rhodobacterales bacterium",
        "infraspecific_name": "",
        "isolate": "ALOHA_A2.5_107",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/02",
        "asm_name": "ASM2244887v1",
        "submitter": "SCOPE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/448/875/GCA_022448875.1_ASM2244887v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-02",
    "dateModified": "2022-03-02",
    "datePublished": "2022-03-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhodobacterales bacterium"
        ],
        "sample_taxid": [
            "1948890"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean: North Pacific Gyre, Station ALOHA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.614 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 64.02,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2130705",
        "Number of Sequences": "227",
        "Longest Sequences (bp)": "86440",
        "N50 (bp)": "17023",
        "Gap Ratio (%)": "0.000939",
        "GCcontent (%)": "40.3",
        "Number of CDSs": "1933",
        "Average Protein Length": "298.5",
        "Coding Ratio (%)": "81.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 64.02,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_001627925.1",
                "gtdb_species": "s__MED-G52 sp001627925",
                "ani": 97.5859,
                "matched_fragments": 479,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__MED-G52",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.54",
                "min_intra_species_ani": "95.86",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002457055.1",
                "gtdb_species": "s__MED-G52 sp002457055",
                "ani": 94.9462,
                "matched_fragments": 452,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__MED-G52",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.90",
                "min_intra_species_ani": "95.38",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCA_902554885.1",
                "gtdb_species": "s__MED-G52 sp902554885",
                "ani": 81.7665,
                "matched_fragments": 212,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__MED-G52",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.17",
                "min_intra_species_ani": "97.17",
                "mean_intra_species_af": "0.65",
                "min_intra_species_af": "0.65",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902602765.1",
                "gtdb_species": "s__MED-G52 sp902602765",
                "ani": 81.3177,
                "matched_fragments": 302,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__MED-G52",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.98",
                "min_intra_species_ani": "95.60",
                "mean_intra_species_af": "0.63",
                "min_intra_species_af": "0.61",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_902635985.1",
                "gtdb_species": "s__MED-G52 sp902635985",
                "ani": 80.8995,
                "matched_fragments": 250,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__MED-G52",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902631295.1",
                "gtdb_species": "s__MED-G52 sp902631295",
                "ani": 80.828,
                "matched_fragments": 299,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__MED-G52",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002711145.1",
                "gtdb_species": "s__MED-G52 sp002711145",
                "ani": 79.1059,
                "matched_fragments": 186,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__MED-G52",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.17",
                "min_intra_species_ani": "95.57",
                "mean_intra_species_af": "0.64",
                "min_intra_species_af": "0.63",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002682975.1",
                "gtdb_species": "s__MED-G52 sp002682975",
                "ani": 78.9615,
                "matched_fragments": 127,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__MED-G52",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.197,
        "cell_length": 0.193,
        "doubling_h": 0.42,
        "growth_tmp": 28.265,
        "optimum_tmp": 28.878,
        "optimum_ph": 7.446,
        "genome_size": 4160747.54,
        "gc_content": 62.69,
        "coding_genes": 4005.416,
        "rRNA16S_genes": 2.751,
        "tRNA_genes": 48.894,
        "gram_stain": 0.003,
        "sporulation": 0.014,
        "motility": 0.422,
        "range_salinity": 0.916,
        "facultative_respiration": 0.083,
        "anaerobic_respiration": 0.046,
        "aerobic_respiration": 0.869,
        "mesophilic_range_tmp": 0.928,
        "thermophilic_range_tmp": 0.035,
        "psychrophilic_range_tmp": 0.035,
        "bacillus_cell_shape": 0.849,
        "coccus_cell_shape": 0.042,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.107,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhodobacterales",
        "f__Rhodobacteraceae",
        "g__MED-G52",
        "s__MED-G52 sp001627925"
    ],
    "_genome_taxon": [
        "Rhodobacterales",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhodobacterales",
        "f__Rhodobacteraceae",
        "g__MED-G52",
        "s__MED-G52 sp001627925",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Rhodobacterales",
        "Rhodobacteraceae",
        "MED-G52",
        "MED-G52",
        "sp001627925"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}