{
    "type": "genome",
    "identifier": "GCA_022449685.1",
    "organism": "Dehalococcoidia bacterium",
    "title": "Dehalococcoidia bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "SCOPE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022449685.1",
        "bioproject": "PRJNA352737",
        "biosample": "SAMN25999066",
        "wgs_master": "JAKUQL000000000.1",
        "refseq_category": "na",
        "taxid": "2026734",
        "species_taxid": "2026734",
        "organism_name": "Dehalococcoidia bacterium",
        "infraspecific_name": "",
        "isolate": "ALOHA_A2.5_28",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/02",
        "asm_name": "ASM2244968v1",
        "submitter": "SCOPE",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/449/685/GCA_022449685.1_ASM2244968v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-02",
    "dateModified": "2022-03-02",
    "datePublished": "2022-03-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Dehalococcoidia bacterium"
        ],
        "sample_taxid": [
            "2026734"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean: North Pacific Gyre, Station ALOHA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.807 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.45,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2805876",
        "Number of Sequences": "122",
        "Longest Sequences (bp)": "182155",
        "N50 (bp)": "48503",
        "Gap Ratio (%)": "0.003600",
        "GCcontent (%)": "57.8",
        "Number of CDSs": "2699",
        "Average Protein Length": "291.6",
        "Coding Ratio (%)": "84.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 95.45,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_009392075.1",
                "gtdb_species": "s__UBA9611 sp009392075",
                "ani": 96.5613,
                "matched_fragments": 494,
                "total_fragments": 872,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__UBA3495;f__UBA3495;g__UBA9611",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.71",
                "min_intra_species_ani": "96.71",
                "mean_intra_species_af": "0.58",
                "min_intra_species_af": "0.58",
                "num_clustered_genomes": 2,
                "status": "inconclusive"
            },
            {
                "accession": "GCA_009392095.1",
                "gtdb_species": "s__UBA9611 sp009391975",
                "ani": 95.7194,
                "matched_fragments": 603,
                "total_fragments": 872,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__UBA3495;f__UBA3495;g__UBA9611",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "97.52",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 9,
                "status": "inconclusive"
            },
            {
                "accession": "GCA_002698265.1",
                "gtdb_species": "s__UBA9611 sp002698265",
                "ani": 81.7389,
                "matched_fragments": 433,
                "total_fragments": 872,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__UBA3495;f__UBA3495;g__UBA9611",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.74",
                "min_intra_species_ani": "98.13",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_002746355.1",
                "gtdb_species": "s__UBA9611 sp002746355",
                "ani": 81.4312,
                "matched_fragments": 633,
                "total_fragments": 872,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__UBA3495;f__UBA3495;g__UBA9611",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.11",
                "min_intra_species_ani": "98.97",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_002328185.1",
                "gtdb_species": "s__UBA9611 sp002328185",
                "ani": 80.9133,
                "matched_fragments": 621,
                "total_fragments": 872,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__UBA3495;f__UBA3495;g__UBA9611",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.09",
                "min_intra_species_ani": "98.06",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_002816575.1",
                "gtdb_species": "s__UBA9611 sp002816575",
                "ani": 78.8887,
                "matched_fragments": 333,
                "total_fragments": 872,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__UBA3495;f__UBA3495;g__UBA9611",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002816585.1",
                "gtdb_species": "s__UBA9611 sp002816585",
                "ani": 78.6276,
                "matched_fragments": 342,
                "total_fragments": 872,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__UBA3495;f__UBA3495;g__UBA9611",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002730485.1",
                "gtdb_species": "s__UBA9611 sp002730485",
                "ani": 78.4448,
                "matched_fragments": 311,
                "total_fragments": 872,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__UBA3495;f__UBA3495;g__UBA9611",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013204585.1",
                "gtdb_species": "s__UBA9611 sp013204585",
                "ani": 78.0519,
                "matched_fragments": 374,
                "total_fragments": 872,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__UBA3495;f__UBA3495;g__UBA9611",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Chloroflexota",
        "c__Dehalococcoidia",
        "o__UBA3495",
        "f__UBA3495",
        "g__UBA9611",
        "s__UBA9611 sp009392075"
    ],
    "_genome_taxon": [
        "Dehalococcoidia",
        "bacterium",
        "d__Bacteria",
        "p__Chloroflexota",
        "c__Dehalococcoidia",
        "o__UBA3495",
        "f__UBA3495",
        "g__UBA9611",
        "s__UBA9611 sp009392075",
        "Bacteria",
        "Chloroflexota",
        "Dehalococcoidia",
        "UBA3495",
        "UBA3495",
        "UBA9611",
        "UBA9611",
        "sp009392075"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}