{
    "type": "genome",
    "identifier": "GCA_022482285.1",
    "organism": "Limosilactobacillus oris",
    "title": "Limosilactobacillus oris",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022482285.1",
        "bioproject": "PRJNA708964",
        "biosample": "SAMN22412687",
        "wgs_master": "JAKVPM000000000.1",
        "refseq_category": "na",
        "taxid": "1632",
        "species_taxid": "1632",
        "organism_name": "Limosilactobacillus oris",
        "infraspecific_name": "",
        "isolate": "UW_DM_LIMLAC2_1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/05",
        "asm_name": "ASM2248228v1",
        "submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCF_022482285.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/482/285/GCA_022482285.1_ASM2248228v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-05",
    "dateModified": "2022-03-05",
    "datePublished": "2022-03-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Limosilactobacillus oris"
        ],
        "sample_taxid": [
            "1632"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Madison, WI",
            "Freezer"
        ],
        "sample_host_location_id": [],
        "data_size": "0.581 MB",
        "sample_ph_range": {
            "min": 55.0,
            "max": 55.0
        },
        "sample_temperature_range": {
            "min": 35.0,
            "max": 80.0
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2044198",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2044198",
        "N50 (bp)": "2044198",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.6",
        "Number of CDSs": "1977",
        "Average Protein Length": "297.9",
        "Coding Ratio (%)": "86.4",
        "Number of rRNAs": "15",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Limosilactobacillus oris",
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                "accession": "GCA_001434465.1",
                "taxid": 1632,
                "species_taxid": 1632,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.7294,
                "matched_fragments": 536,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus antri",
                "strain": "strain=DSM 16041",
                "accession": "GCA_000160835.1",
                "taxid": 227943,
                "species_taxid": 227943,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9359,
                "matched_fragments": 509,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus antri",
                "strain": "strain=DSM 16041",
                "accession": "GCA_001435475.1",
                "taxid": 227943,
                "species_taxid": 227943,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.8508,
                "matched_fragments": 504,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus panis",
                "strain": "strain=DSM 6035",
                "accession": "GCA_001027985.1",
                "taxid": 47493,
                "species_taxid": 47493,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2684,
                "matched_fragments": 276,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus panis",
                "strain": "strain=DSM 6035",
                "accession": "GCA_001435935.1",
                "taxid": 47493,
                "species_taxid": 47493,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2219,
                "matched_fragments": 269,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus pontis",
                "strain": "strain=DSM 8475",
                "accession": "GCA_001435345.1",
                "taxid": 35787,
                "species_taxid": 35787,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8908,
                "matched_fragments": 190,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus urinaemulieris",
                "strain": "strain=c9Ua_26_M",
                "accession": "GCA_014838745.1",
                "taxid": 2742600,
                "species_taxid": 2742600,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6974,
                "matched_fragments": 107,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus secaliphilus",
                "strain": "strain=DSM 17896",
                "accession": "GCA_001437055.1",
                "taxid": 396268,
                "species_taxid": 396268,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4456,
                "matched_fragments": 102,
                "total_fragments": 681,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001434465.1",
                "gtdb_species": "s__Limosilactobacillus oris",
                "ani": 95.7294,
                "matched_fragments": 536,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.39",
                "min_intra_species_ani": "95.80",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000160835.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_019117185.1",
                "gtdb_species": "s__Limosilactobacillus intestinipullorum",
                "ani": 80.9082,
                "matched_fragments": 273,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.21",
                "min_intra_species_ani": "99.14",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902834055.1",
                "gtdb_species": "s__Limosilactobacillus sp902834055",
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                "matched_fragments": 128,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905214235.1",
                "gtdb_species": "s__Limosilactobacillus sp905214235",
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                "matched_fragments": 277,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001435935.1",
                "gtdb_species": "s__Limosilactobacillus panis",
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                "matched_fragments": 272,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019117285.1",
                "gtdb_species": "s__Limosilactobacillus intestinigallinarum",
                "ani": 80.1211,
                "matched_fragments": 140,
                "total_fragments": 681,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
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            },
            {
                "accession": "GCF_002940945.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_019118405.1",
                "gtdb_species": "s__Limosilactobacillus gallistercoris",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
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            },
            {
                "accession": "GCA_002299975.1",
                "gtdb_species": "s__Limosilactobacillus sp002299975",
                "ani": 78.6932,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.38",
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            {
                "accession": "GCF_001437055.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Limosilactobacillus",
        "s__Limosilactobacillus sp946579075"
    ],
    "_genome_taxon": [
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        "p__Bacillota",
        "c__Bacilli",
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        "f__Lactobacillaceae",
        "g__Limosilactobacillus",
        "s__Limosilactobacillus sp946579075",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Lactobacillaceae",
        "Limosilactobacillus",
        "Limosilactobacillus",
        "sp946579075"
    ],
    "_meo": [
        {
            "id": "MEO_0000119",
            "label": "bioreactor"
        }
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}