{ "type": "genome", "identifier": "GCA_022482715.1", "organism": "Lachnospiraceae bacterium", "title": "Lachnospiraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022482715.1", "bioproject": "PRJNA708967", "biosample": "SAMN22412249", "wgs_master": "JAKVOQ000000000.1", "refseq_category": "na", "taxid": "1898203", "species_taxid": "1898203", "organism_name": "Lachnospiraceae bacterium", "infraspecific_name": "", "isolate": "UW_MP_LCO1_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/05", "asm_name": "ASM2248271v1", "submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/482/715/GCA_022482715.1_ASM2248271v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-05", "dateModified": "2022-03-05", "datePublished": "2022-03-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Lachnospiraceae bacterium" ], "sample_taxid": [ "1898203" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Madison, WI", "Freezer" ], "sample_host_location_id": [], "data_size": "0.914 MB", "sample_ph_range": { "min": 55.0, "max": 55.0 }, "sample_temperature_range": { "min": 35.0, "max": 80.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3245688", "Number of Sequences": "4", "Longest Sequences (bp)": "1630548", "N50 (bp)": "1630548", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.9", "Number of CDSs": "3077", "Average Protein Length": "308.9", "Coding Ratio (%)": "87.8", "Number of rRNAs": "10", "Number of tRNAs": "58", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Coprococcus comes", "strain": "strain=ATCC 27758", "accession": "GCA_025149785.1", "taxid": 410072, "species_taxid": 410072, "relation_to_type": "type", "validated": true, "ani": 83.9187, "matched_fragments": 118, "total_fragments": 1080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia intestinalis", "strain": "strain=L1-82", "accession": "GCA_900537995.1", "taxid": 166486, "species_taxid": 166486, "relation_to_type": "type", "validated": true, "ani": 83.4858, "matched_fragments": 168, "total_fragments": 1080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium fessum", "strain": 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39488, "species_taxid": 39488, "relation_to_type": "type", "validated": true, "ani": 82.7516, "matched_fragments": 77, "total_fragments": 1080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia hominis", "strain": "strain=A2-183", "accession": "GCA_000225345.1", "taxid": 301301, "species_taxid": 301301, "relation_to_type": "type", "validated": true, "ani": 81.9357, "matched_fragments": 124, "total_fragments": 1080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia faecis", "strain": "strain=M72", "accession": "GCA_001406815.1", "taxid": 301302, "species_taxid": 301302, "relation_to_type": "type", "validated": true, "ani": 81.3367, "matched_fragments": 213, "total_fragments": 1080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia hansenii", "strain": "strain=DSM 20583", "accession": "GCA_025147655.1", "taxid": 1322, "species_taxid": 1322, "relation_to_type": "type", "validated": true, "ani": 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