{
    "type": "genome",
    "identifier": "GCA_022482815.1",
    "organism": "Acidaminococcus sp.",
    "title": "Acidaminococcus sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022482815.1",
        "bioproject": "PRJNA708967",
        "biosample": "SAMN22412068",
        "wgs_master": "JAKVOM000000000.1",
        "refseq_category": "na",
        "taxid": "1872103",
        "species_taxid": "1872103",
        "organism_name": "Acidaminococcus sp.",
        "infraspecific_name": "",
        "isolate": "UW_MP_ACID1_1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/05",
        "asm_name": "ASM2248281v1",
        "submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/482/815/GCA_022482815.1_ASM2248281v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-05",
    "dateModified": "2022-03-05",
    "datePublished": "2022-03-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Acidaminococcus sp."
        ],
        "sample_taxid": [
            "1872103"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Madison, WI",
            "Freezer"
        ],
        "sample_host_location_id": [],
        "data_size": "0.861 MB",
        "sample_ph_range": {
            "min": 55.0,
            "max": 55.0
        },
        "sample_temperature_range": {
            "min": 35.0,
            "max": 80.0
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3057042",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3057042",
        "N50 (bp)": "3057042",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.1",
        "Number of CDSs": "2583",
        "Average Protein Length": "325.5",
        "Coding Ratio (%)": "82.5",
        "Number of rRNAs": "9",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Acidaminococcus provencensis",
                "strain": "strain=Marseille-P4266",
                "accession": "GCA_900291475.1",
                "taxid": 2058289,
                "species_taxid": 2058289,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1093,
                "matched_fragments": 166,
                "total_fragments": 1019,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidaminococcus massiliensis",
                "strain": "strain=Marseille-P2828",
                "accession": "GCA_900095825.1",
                "taxid": 1852375,
                "species_taxid": 1852375,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4248,
                "matched_fragments": 134,
                "total_fragments": 1019,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidaminococcus fermentans",
                "strain": "strain=DSM 20731",
                "accession": "GCA_000025305.1",
                "taxid": 905,
                "species_taxid": 905,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9976,
                "matched_fragments": 136,
                "total_fragments": 1019,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidaminococcus intestini",
                "strain": "strain=DSM 21505",
                "accession": "GCA_000425045.1",
                "taxid": 187327,
                "species_taxid": 187327,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5466,
                "matched_fragments": 194,
                "total_fragments": 1019,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidaminococcus timonensis",
                "strain": "strain=Marseille-P2764",
                "accession": "GCA_900106585.1",
                "taxid": 1871002,
                "species_taxid": 1871002,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2631,
                "matched_fragments": 134,
                "total_fragments": 1019,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900291475.1",
                "gtdb_species": "s__Acidaminococcus provencensis",
                "ani": 80.1119,
                "matched_fragments": 166,
                "total_fragments": 1019,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Acidaminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.37",
                "min_intra_species_ani": "99.31",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_900315205.1",
                "gtdb_species": "s__Acidaminococcus sp900315205",
                "ani": 79.4684,
                "matched_fragments": 299,
                "total_fragments": 1019,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Acidaminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.22",
                "min_intra_species_ani": "98.84",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_900314165.1",
                "gtdb_species": "s__Acidaminococcus sp900314165",
                "ani": 78.6675,
                "matched_fragments": 141,
                "total_fragments": 1019,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Acidaminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000425045.1",
                "gtdb_species": "s__Acidaminococcus intestini",
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                "total_fragments": 1019,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Acidaminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.60",
                "min_intra_species_ani": "99.25",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCF_900106585.1",
                "gtdb_species": "s__Acidaminococcus timonensis",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Acidaminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.46",
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                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900538365.1",
                "gtdb_species": "s__Acidaminococcus sp900538365",
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                "matched_fragments": 186,
                "total_fragments": 1019,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Acidaminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.99",
                "min_intra_species_ani": "97.67",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_902796945.1",
                "gtdb_species": "s__Acidaminococcus sp902796945",
                "ani": 78.1277,
                "matched_fragments": 214,
                "total_fragments": 1019,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Acidaminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.241,
        "cell_length": -0.241,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 36.125,
        "optimum_ph": 7.0,
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        "gc_content": 52.9,
        "coding_genes": 2184.333,
        "rRNA16S_genes": 4.5,
        "tRNA_genes": 56.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Acidaminococcales",
        "f__Acidaminococcaceae",
        "g__Acidaminococcus",
        "s__Acidaminococcus sp022482815"
    ],
    "_genome_taxon": [
        "Acidaminococcus",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Acidaminococcales",
        "f__Acidaminococcaceae",
        "g__Acidaminococcus",
        "s__Acidaminococcus sp022482815",
        "Bacteria",
        "Bacillota",
        "C",
        "Negativicutes",
        "Acidaminococcales",
        "Acidaminococcaceae",
        "Acidaminococcus",
        "Acidaminococcus",
        "sp022482815"
    ],
    "_meo": [
        {
            "id": "MEO_0000119",
            "label": "bioreactor"
        }
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}