{ "type": "genome", "identifier": "GCA_022482885.1", "organism": "Olsenella sp.", "title": "Olsenella sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022482885.1", "bioproject": "PRJNA708969", "biosample": "SAMN22412115", "wgs_master": "JAKVOH000000000.1", "refseq_category": "na", "taxid": "2042683", "species_taxid": "2042683", "organism_name": "Olsenella sp.", "infraspecific_name": "", "isolate": "UW_MP_ATO3_5", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/05", "asm_name": "ASM2248288v1", "submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/482/885/GCA_022482885.1_ASM2248288v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-05", "dateModified": "2022-03-05", "datePublished": "2022-03-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Olsenella sp." ], "sample_taxid": [ "2042683" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Madison, WI", "Freezer" ], "sample_host_location_id": [], "data_size": "0.726 MB", "sample_ph_range": { "min": 55.0, "max": 55.0 }, "sample_temperature_range": { "min": 35.0, "max": 80.0 }, "completeness": 95.37, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2588779", "Number of Sequences": "5", "Longest Sequences (bp)": "707209", "N50 (bp)": "524336", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.0", "Number of CDSs": "2441", "Average Protein Length": "301.2", "Coding Ratio (%)": "85.2", "Number of rRNAs": "6", "Number of tRNAs": "37", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermophilibacter mediterraneus", "strain": "strain=Marseille-P3256", "accession": "GCA_900119385.1", "taxid": 1871031, "species_taxid": 1871031, "relation_to_type": "type", "validated": true, "ani": 80.0123, "matched_fragments": 260, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella phocaeensis", "strain": "strain=Marseille-P2936", "accession": "GCA_900120385.1", "taxid": 1852385, "species_taxid": 1852385, "relation_to_type": "type", "validated": true, "ani": 79.8995, "matched_fragments": 248, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter provencensis", "strain": "strain=Marseille-P2912", "accession": "GCA_900128445.1", "taxid": 1852386, "species_taxid": 1852386, "relation_to_type": "type", "validated": true, "ani": 79.8512, "matched_fragments": 271, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter immobilis", "strain": "strain=LZLJ-2", "accession": "GCA_015277515.1", "taxid": 2779519, "species_taxid": 2779519, "relation_to_type": "type", "validated": true, "ani": 79.6046, "matched_fragments": 259, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella intestinalis", "strain": "strain=KCTC 25379", "accession": "GCA_023276655.1", "taxid": 2930083, "species_taxid": 2930083, "relation_to_type": "type", "validated": true, "ani": 79.5122, "matched_fragments": 227, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella uli", "strain": "strain=DSM 7084", "accession": "GCA_000143845.1", "taxid": 133926, "species_taxid": 133926, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1602, "matched_fragments": 216, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parolsenella massiliensis", "strain": "strain=Marseille-P3237", "accession": "GCA_900143685.1", "taxid": 1871022, "species_taxid": 1871022, "relation_to_type": "type", "validated": true, "ani": 79.1491, "matched_fragments": 206, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parolsenella catena", "strain": "strain=JCM 31932", "accession": "GCA_003966955.1", "taxid": 2003188, "species_taxid": 2003188, "relation_to_type": "type", "validated": true, "ani": 79.1451, "matched_fragments": 192, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella uli", "strain": "strain=DSM 7084", "accession": "GCA_001437585.1", "taxid": 133926, "species_taxid": 133926, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1369, "matched_fragments": 215, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella bouchesdurhonensis", "strain": "strain=Marseille-P3296", "accession": "GCA_900155365.1", "taxid": 1907654, "species_taxid": 1907654, "relation_to_type": "type", "validated": true, "ani": 77.8337, "matched_fragments": 84, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enorma shizhengliae", "strain": "strain=HF-1365", "accession": "GCA_009676995.1", "taxid": 2606615, "species_taxid": 2606615, "relation_to_type": "type", "validated": true, "ani": 77.7298, "matched_fragments": 102, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella vaginalis", "strain": "strain=Marseille-P2666", "accession": "GCA_900176655.1", "taxid": 1870987, "species_taxid": 1870987, "relation_to_type": "type", "validated": true, "ani": 77.5278, "matched_fragments": 100, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonibacter urolithinfaciens", "strain": "strain=DSM 27213T", "accession": "GCA_900199375.1", "taxid": 1335613, "species_taxid": 1335613, "relation_to_type": "type", "validated": true, "ani": 77.0807, "matched_fragments": 76, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonibacter urolithinfaciens", "strain": "strain=DSM 27213", "accession": "GCA_003788975.1", "taxid": 1335613, "species_taxid": 1335613, "relation_to_type": "type", "validated": true, "ani": 76.7898, "matched_fragments": 75, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.37, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900548775.1", "gtdb_species": "s__Tractidigestivibacter sp900548775", "ani": 87.2119, "matched_fragments": 502, "total_fragments": 859, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Tractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.21", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.74", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_902834555.1", "gtdb_species": "s__Tractidigestivibacter sp902834555", "ani": 87.046, "matched_fragments": 585, "total_fragments": 859, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Tractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900119625.1", "gtdb_species": "s__Tractidigestivibacter sp900119625", "ani": 86.9783, "matched_fragments": 563, "total_fragments": 859, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Tractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.91", "min_intra_species_ani": "96.91", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.78", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001494635.1", "gtdb_species": "s__Tractidigestivibacter scatoligenes", "ani": 86.9289, "matched_fragments": 576, "total_fragments": 859, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Tractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000752675.2", "gtdb_species": "s__Tractidigestivibacter sp000752675", "ani": 86.8226, "matched_fragments": 576, "total_fragments": 859, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Tractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "96.78", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCA_900768455.1", "gtdb_species": "s__Tractidigestivibacter sp900768455", "ani": 86.8077, "matched_fragments": 477, "total_fragments": 859, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Tractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.35", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_902773995.1", "gtdb_species": "s__Tractidigestivibacter sp902773995", "ani": 86.7289, "matched_fragments": 523, "total_fragments": 859, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Tractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.13", "min_intra_species_ani": "97.55", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_900770865.1", "gtdb_species": "s__Tractidigestivibacter sp900770865", "ani": 86.4409, "matched_fragments": 373, "total_fragments": 859, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Tractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905214175.1", "gtdb_species": "s__Tractidigestivibacter sp905214175", "ani": 85.9877, "matched_fragments": 350, "total_fragments": 859, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Tractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004557505.1", "gtdb_species": "s__Tractidigestivibacter sp004557505", "ani": 85.3426, "matched_fragments": 509, "total_fragments": 859, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Tractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": -0.097, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 6.5, "genome_size": 2356193.333, "gc_content": 64.7, "coding_genes": 1727.667, "rRNA16S_genes": 1.0, "tRNA_genes": 49.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__Atopobiaceae", "g__Tractidigestivibacter", "s__Tractidigestivibacter sp022648325" ], "_genome_taxon": [ "Olsenella", "sp.", "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__Atopobiaceae", "g__Tractidigestivibacter", "s__Tractidigestivibacter sp022648325", "Bacteria", "Actinomycetota", "Coriobacteriia", "Coriobacteriales", "Atopobiaceae", "Tractidigestivibacter", "Tractidigestivibacter", "sp022648325" ], "_meo": [ { "id": "MEO_0000119", "label": "bioreactor" } ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }