{
    "type": "genome",
    "identifier": "GCA_022483045.1",
    "organism": "Oscillospiraceae bacterium",
    "title": "Oscillospiraceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_022483045.1",
        "bioproject": "PRJNA708970",
        "biosample": "SAMN22412086",
        "wgs_master": "JAKVOA000000000.1",
        "refseq_category": "na",
        "taxid": "2485925",
        "species_taxid": "2485925",
        "organism_name": "Oscillospiraceae bacterium",
        "infraspecific_name": "",
        "isolate": "UW_MP_ACUT1_1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/05",
        "asm_name": "ASM2248304v1",
        "submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/483/045/GCA_022483045.1_ASM2248304v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-05",
    "dateModified": "2022-03-05",
    "datePublished": "2022-03-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Oscillospiraceae bacterium"
        ],
        "sample_taxid": [
            "2485925"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Madison, WI",
            "Freezer"
        ],
        "sample_host_location_id": [],
        "data_size": "0.695 MB",
        "sample_ph_range": {
            "min": 55.0,
            "max": 55.0
        },
        "sample_temperature_range": {
            "min": 21.0,
            "max": 80.0
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2467380",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "1822660",
        "N50 (bp)": "1822660",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.6",
        "Number of CDSs": "2326",
        "Average Protein Length": "307.7",
        "Coding Ratio (%)": "87.0",
        "Number of rRNAs": "9",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Caproicibacterium lactatifermentans",
                "strain": "strain=LBM19010",
                "accession": "GCA_013315815.1",
                "taxid": 2666138,
                "species_taxid": 2666138,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6542,
                "matched_fragments": 295,
                "total_fragments": 821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caproicibacter fermentans",
                "strain": "strain=EA1",
                "accession": "GCA_009746625.1",
                "taxid": 2576756,
                "species_taxid": 2576756,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8052,
                "matched_fragments": 62,
                "total_fragments": 821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Caproicibacterium amylolyticum",
                "strain": "strain=LBM18003",
                "accession": "GCA_014467055.1",
                "taxid": 2766537,
                "species_taxid": 2766537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8016,
                "matched_fragments": 237,
                "total_fragments": 821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaeromassilibacillus senegalensis",
                "strain": "strain=mt9",
                "accession": "GCA_001261775.1",
                "taxid": 1673717,
                "species_taxid": 1673717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0239,
                "matched_fragments": 57,
                "total_fragments": 821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium jeddahense",
                "strain": "strain=JCD",
                "accession": "GCA_000577335.1",
                "taxid": 1414721,
                "species_taxid": 1414721,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2028,
                "matched_fragments": 52,
                "total_fragments": 821,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogeniiclostridium mannosilyticum",
                "strain": "strain=ASD2818",
                "accession": "GCA_003268275.1",
                "taxid": 2764322,
                "species_taxid": 2764322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1568,
                "matched_fragments": 51,
                "total_fragments": 821,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002119605.1",
                "gtdb_species": "s__Caproicibacterium sp002119605",
                "ani": 79.3838,
                "matched_fragments": 293,
                "total_fragments": 821,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caproicibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.88",
                "min_intra_species_ani": "99.69",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 26,
                "status": "-"
            },
            {
                "accession": "GCF_014467055.1",
                "gtdb_species": "s__Caproicibacterium amylolyticum",
                "ani": 78.6789,
                "matched_fragments": 236,
                "total_fragments": 821,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caproicibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.85",
                "min_intra_species_ani": "98.85",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900184925.1",
                "gtdb_species": "s__Caproicibacter sp900184925",
                "ani": 78.4885,
                "matched_fragments": 63,
                "total_fragments": 821,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caproicibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000752215.1",
                "gtdb_species": "s__Caproiciproducens sp000752215",
                "ani": 78.3112,
                "matched_fragments": 70,
                "total_fragments": 821,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caproiciproducens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.70",
                "min_intra_species_ani": "97.09",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_002399445.1",
                "gtdb_species": "s__Caproicibacterium sp002399445",
                "ani": 77.5094,
                "matched_fragments": 131,
                "total_fragments": 821,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caproicibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.23",
                "min_intra_species_ani": "98.41",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_900554535.1",
                "gtdb_species": "s__Caproicibacterium sp900554535",
                "ani": 76.9468,
                "matched_fragments": 77,
                "total_fragments": 821,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caproicibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.83",
                "min_intra_species_ani": "99.83",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000577335.1",
                "gtdb_species": "s__Clostridium_E jeddahense",
                "ani": 76.2028,
                "matched_fragments": 52,
                "total_fragments": 821,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Clostridium_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.87",
                "min_intra_species_ani": "96.05",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_003268275.1",
                "gtdb_species": "s__Hydrogeniiclostridium mannosilyticum",
                "ani": 76.1568,
                "matched_fragments": 51,
                "total_fragments": 821,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Hydrogeniiclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.29",
                "min_intra_species_ani": "98.81",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_012839345.1",
                "gtdb_species": "s__Caproiciproducens sp012839345",
                "ani": 76.0308,
                "matched_fragments": 54,
                "total_fragments": 821,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caproiciproducens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.55",
                "min_intra_species_ani": "99.55",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900546895.1",
                "gtdb_species": "s__Caproiciproducens sp900546895",
                "ani": 75.9764,
                "matched_fragments": 52,
                "total_fragments": 821,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Caproiciproducens",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.397,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 6.25,
        "genome_size": 4470621.5,
        "gc_content": 49.895,
        "coding_genes": 4347.333,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 61.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Acutalibacteraceae",
        "g__Caproicibacterium",
        "s__Caproicibacterium sp022483045"
    ],
    "_genome_taxon": [
        "Oscillospiraceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Acutalibacteraceae",
        "g__Caproicibacterium",
        "s__Caproicibacterium sp022483045",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Acutalibacteraceae",
        "Caproicibacterium",
        "Caproicibacterium",
        "sp022483045"
    ],
    "_meo": [
        {
            "id": "MEO_0000119",
            "label": "bioreactor"
        }
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}