{ "type": "genome", "identifier": "GCA_022484265.1", "organism": "Companilactobacillus sp.", "title": "Companilactobacillus sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022484265.1", "bioproject": "PRJNA768539", "biosample": "SAMN22412455", "wgs_master": "JAKVLR000000000.1", "refseq_category": "na", "taxid": "2767905", "species_taxid": "2767905", "organism_name": "Companilactobacillus sp.", "infraspecific_name": "", "isolate": "UW_TS_COMLAC1_4", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/05", "asm_name": "ASM2248426v1", "submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/484/265/GCA_022484265.1_ASM2248426v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-05", "dateModified": "2022-03-05", "datePublished": "2022-03-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Companilactobacillus sp." ], "sample_taxid": [ "2767905" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Madison, WI", "Freezer" ], "sample_host_location_id": [], "data_size": "0.751 MB", "sample_ph_range": { "min": 55.0, "max": 55.0 }, "sample_temperature_range": { "min": 35.0, "max": 80.0 }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2666948", "Number of Sequences": "1", "Longest Sequences (bp)": "2666948", "N50 (bp)": "2666948", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.3", "Number of CDSs": "2588", "Average Protein Length": "299.5", "Coding Ratio (%)": "87.2", "Number of rRNAs": "12", "Number of tRNAs": "59", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Companilactobacillus ginsenosidimutans", "strain": "strain=EMML 3041", "accession": "GCA_001050475.1", "taxid": 1007676, "species_taxid": 1007676, "relation_to_type": "type", "validated": true, "ani": 81.8068, "matched_fragments": 443, "total_fragments": 888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Companilactobacillus zhongbaensis", "strain": "strain=M1575", "accession": "GCA_003946515.1", "taxid": 2486009, "species_taxid": 2486009, "relation_to_type": "type", "validated": true, "ani": 81.0645, "matched_fragments": 446, "total_fragments": 888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Companilactobacillus mishanensis", "strain": 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"accession": "GCA_001434295.1", "taxid": 194326, "species_taxid": 194326, "relation_to_type": "type", "validated": true, "ani": 80.2913, "matched_fragments": 397, "total_fragments": 888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Companilactobacillus insicii", "strain": "strain=DSM 29801", "accession": "GCA_003946015.1", "taxid": 1732567, "species_taxid": 1732567, "relation_to_type": "type", "validated": true, "ani": 79.2021, "matched_fragments": 180, "total_fragments": 888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Companilactobacillus baiquanensis", "strain": "strain=184-8", "accession": "GCA_003946605.1", "taxid": 2486005, "species_taxid": 2486005, "relation_to_type": "type", "validated": true, "ani": 78.988, "matched_fragments": 207, "total_fragments": 888, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Companilactobacillus pabuli", "strain": "strain=NFFJ11", "accession": "GCA_014058425.1", "taxid": 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938155, "relation_to_type": "type", "validated": true, "ani": 78.4844, "matched_fragments": 198, "total_fragments": 888, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001050475.1", "gtdb_species": "s__Companilactobacillus ginsenosidimutans", "ani": 81.8292, "matched_fragments": 442, "total_fragments": 888, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Companilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003946515.1", "gtdb_species": "s__Companilactobacillus zhongbaensis", "ani": 81.0559, "matched_fragments": 446, "total_fragments": 888, "gtdb_taxonomy": 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