{ "type": "genome", "identifier": "GCA_022484725.1", "organism": "Bifidobacterium minimum", "title": "Bifidobacterium minimum", "description": "derived from metagenome; incomplete metagenome", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022484725.1", "bioproject": "PRJNA768543", "biosample": "SAMN22412166", "wgs_master": "JAKVKW000000000.1", "refseq_category": "na", "taxid": "1693", "species_taxid": "1693", "organism_name": "Bifidobacterium minimum", "infraspecific_name": "", "isolate": "UW_MP_BIF17_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/05", "asm_name": "ASM2248472v1", "submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/484/725/GCA_022484725.1_ASM2248472v1", "excluded_from_refseq": "derived from metagenome; incomplete metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-05", "dateModified": "2022-03-05", "datePublished": "2022-03-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium minimum" ], "sample_taxid": [ "1693" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Madison, WI", "Freezer" ], "sample_host_location_id": [], "data_size": "0.416 MB", "sample_ph_range": { "min": 55.0, "max": 55.0 }, "sample_temperature_range": { "min": 21.0, "max": 80.0 }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1487667", "Number of Sequences": "68", "Longest Sequences (bp)": "72955", "N50 (bp)": "27143", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.2", "Number of CDSs": "1175", "Average Protein Length": "346.9", "Coding Ratio (%)": "82.2", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bifidobacterium minimum", "strain": "strain=DSM 20102", "accession": "GCA_000421685.1", "taxid": 1693, "species_taxid": 1693, "relation_to_type": "type", "validated": true, "ani": 98.9279, "matched_fragments": 440, "total_fragments": 469, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium minimum", "strain": "strain=DSM 20102", "accession": "GCA_000771245.1", "taxid": 1693, "species_taxid": 1693, "relation_to_type": "type", "validated": true, "ani": 98.9002, "matched_fragments": 437, "total_fragments": 469, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium minimum", "strain": "strain=LMG 11592", "accession": "GCA_000741645.1", "taxid": 1693, "species_taxid": 1693, "relation_to_type": "type", "validated": true, "ani": 98.8977, "matched_fragments": 443, "total_fragments": 469, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bifidobacterium avesanii", "strain": "strain=DSM 100685", "accession": "GCA_009299475.1", "taxid": 1798157, "species_taxid": 1798157, "relation_to_type": "type", "validated": true, "ani": 78.9441, "matched_fragments": 149, "total_fragments": 469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium amazonense", "strain": "strain=MA1", "accession": "GCA_018555435.2", "taxid": 2809027, "species_taxid": 2809027, "relation_to_type": "type", "validated": true, "ani": 78.732, "matched_fragments": 168, "total_fragments": 469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium scardovii", "strain": "strain=DSM 13734", "accession": "GCA_001005065.1", "taxid": 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78.1634, "matched_fragments": 154, "total_fragments": 469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium subtile", "strain": "strain=DSM 20096", "accession": "GCA_000426405.1", "taxid": 77635, "species_taxid": 77635, "relation_to_type": "type", "validated": true, "ani": 78.1446, "matched_fragments": 161, "total_fragments": 469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium miconisargentati", "strain": "strain=82T25", "accession": "GCA_019331675.1", "taxid": 2834437, "species_taxid": 2834437, "relation_to_type": "type", "validated": true, "ani": 78.075, "matched_fragments": 172, "total_fragments": 469, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium commune", "strain": "strain=DSM 28792", "accession": "GCA_014191315.1", "taxid": 1505727, "species_taxid": 1505727, "relation_to_type": "type", "validated": true, "ani": 77.2183, "matched_fragments": 52, 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