{ "type": "genome", "identifier": "GCA_022560615.1", "organism": "Gemmatimonadota bacterium", "title": "Gemmatimonadota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Institute of Deep Sea Science and Engineering, Chines Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022560615.1", "bioproject": "PRJNA635214", "biosample": "SAMN16244298", "wgs_master": "JADFSR000000000.1", "refseq_category": "na", "taxid": "2026742", "species_taxid": "2026742", "organism_name": "Gemmatimonadota bacterium", "infraspecific_name": "", "isolate": "B93T3L11", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/14", "asm_name": "ASM2256061v1", "submitter": "Institute of Deep Sea Science and Engineering, Chines Academy of Sciences", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/560/615/GCA_022560615.1_ASM2256061v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-14", "dateModified": "2022-03-14", "datePublished": "2022-03-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Gemmatimonadota bacterium" ], "sample_taxid": [ "2026742" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: Mariana Trench" ], "sample_host_location_id": [], "data_size": "1.261 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4500843", "Number of Sequences": "105", "Longest Sequences (bp)": "376307", "N50 (bp)": "92825", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.8", "Number of CDSs": "4035", "Average Protein Length": "330.5", "Coding Ratio (%)": "88.9", "Number of rRNAs": "1", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Longimicrobium terrae", "strain": "strain=CB-286315", "accession": "GCA_013000925.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 75.2249, "matched_fragments": 64, "total_fragments": 1445, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=DSM 29007", "accession": "GCA_014202995.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 75.2105, "matched_fragments": 63, "total_fragments": 1445, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=CECT 8660", "accession": "GCA_014198875.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 75.1976, "matched_fragments": 64, "total_fragments": 1445, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmatirosa kalamazoonensis", "strain": "strain=KBS708", "accession": "GCA_000522985.1", "taxid": 861299, "species_taxid": 861299, "relation_to_type": "type", "validated": true, "ani": 75.1184, "matched_fragments": 129, "total_fragments": 1445, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia oceani", "strain": "strain=KRD185", "accession": "GCA_019263585.2", "taxid": 2792013, "species_taxid": 2792013, "relation_to_type": "type", "validated": true, "ani": 74.6925, "matched_fragments": 81, "total_fragments": 1445, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Labilithrix luteola", "strain": "strain=DSM 27648", "accession": "GCA_001263205.1", "taxid": 1391654, "species_taxid": 1391654, "relation_to_type": "type", "validated": true, "ani": 74.6793, "matched_fragments": 86, "total_fragments": 1445, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 74.6574, "matched_fragments": 64, "total_fragments": 1445, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomycetospora endophytica", "strain": "strain=TBRC 5722", "accession": "GCA_021026375.1", "taxid": 2291215, "species_taxid": 2291215, "relation_to_type": "type", "validated": true, "ani": 74.5517, "matched_fragments": 70, "total_fragments": 1445, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_015664885.1", "gtdb_species": "s__UBA1138 sp003447875", "ani": 83.9197, "matched_fragments": 922, "total_fragments": 1445, "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__UBA1138", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.72", "min_intra_species_ani": "99.64", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_009692205.1", "gtdb_species": "s__UBA2982 sp009692205", "ani": 77.0519, "matched_fragments": 188, "total_fragments": 1445, "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__UBA2982", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016873995.1", "gtdb_species": "s__UBA2982 sp016873995", "ani": 76.8943, "matched_fragments": 186, "total_fragments": 1445, "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__UBA2982", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015492755.1", "gtdb_species": "s__S146-37 sp015492755", "ani": 76.8643, "matched_fragments": 138, "total_fragments": 1445, "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__S146-37", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002390225.1", "gtdb_species": "s__UBA2589 sp002390225", "ani": 76.772, "matched_fragments": 109, "total_fragments": 1445, "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__UBA2589", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013002885.1", "gtdb_species": "s__UBA2589 sp013002885", "ani": 76.4852, "matched_fragments": 166, "total_fragments": 1445, "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__UBA2589", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.00", "min_intra_species_ani": "99.00", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003695865.1", "gtdb_species": "s__J028 sp003695865", "ani": 76.4047, "matched_fragments": 107, "total_fragments": 1445, "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__J028", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003248075.1", "gtdb_species": "s__SZUA-318 sp003248075", "ani": 76.3935, "matched_fragments": 196, "total_fragments": 1445, "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__SZUA-318", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009937285.1", "gtdb_species": "s__UBA1138 sp009937285", "ani": 76.3423, "matched_fragments": 120, "total_fragments": 1445, "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__UBA1138", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "98.44", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.79", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCA_018678395.1", "gtdb_species": "s__IDS-52 sp018678395", "ani": 76.2561, "matched_fragments": 91, "total_fragments": 1445, "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__IDS-52", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.28", "min_intra_species_ani": "98.28", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.76", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_009838975.1", "gtdb_species": "s__Bin94 sp009838975", "ani": 76.1195, "matched_fragments": 102, "total_fragments": 1445, "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__Bin94", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.37", "min_intra_species_ani": "98.63", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_009840215.1", "gtdb_species": "s__Bin94 sp009840215", "ani": 76.0195, "matched_fragments": 85, "total_fragments": 1445, "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__Bin94", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.38", "min_intra_species_ani": "99.00", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_009840525.1", "gtdb_species": "s__BD2-11 sp009840525", "ani": 75.8303, "matched_fragments": 111, "total_fragments": 1445, "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__BD2-11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.09", "min_intra_species_ani": "95.11", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_007126575.1", "gtdb_species": "s__SLBA01 sp007126575", "ani": 75.7338, "matched_fragments": 83, "total_fragments": 1445, "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__SLBA01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "99.74", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_007692665.1", "gtdb_species": "s__SKNW01 sp007692665", "ani": 75.2246, "matched_fragments": 73, "total_fragments": 1445, "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__UBA6960;g__SKNW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Gemmatimonadota", "c__Gemmatimonadetes", "o__Longimicrobiales", "f__UBA6960", "g__UBA1138", "s__UBA1138 sp022560615" ], "_genome_taxon": [ "Gemmatimonadota", "bacterium", "d__Bacteria", "p__Gemmatimonadota", "c__Gemmatimonadetes", "o__Longimicrobiales", "f__UBA6960", "g__UBA1138", "s__UBA1138 sp022560615", "Bacteria", "Gemmatimonadota", "Gemmatimonadetes", "Longimicrobiales", "UBA6960", "UBA1138", "UBA1138", "sp022560615" ], "_meo": [ { "id": "MEO_0000040", "label": "marine sediment" }, { "id": "MEO_0001378", "label": "deep" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }