{ "type": "genome", "identifier": "GCA_022562945.1", "organism": "Pseudomonadota bacterium", "title": "Pseudomonadota bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Institute of Deep Sea Science and Engineering, Chines Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022562945.1", "bioproject": "PRJNA635214", "biosample": "SAMN16244062", "wgs_master": "JADFOH000000000.1", "refseq_category": "na", "taxid": "1977087", "species_taxid": "1977087", "organism_name": "Pseudomonadota bacterium", "infraspecific_name": "", "isolate": "B68T1B5", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/14", "asm_name": "ASM2256294v1", "submitter": "Institute of Deep Sea Science and Engineering, Chines Academy of Sciences", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/562/945/GCA_022562945.1_ASM2256294v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-14", "dateModified": "2022-03-14", "datePublished": "2022-03-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonadota bacterium" ], "sample_taxid": [ "1977087" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: Mariana Trench" ], "sample_host_location_id": [], "data_size": "0.799 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 34.28, "contamination": 1.52, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2876042", "Number of Sequences": "772", "Longest Sequences (bp)": "29260", "N50 (bp)": "3875", "Gap Ratio (%)": "0.273883", "GCcontent (%)": "67.7", "Number of CDSs": "2037", "Average Protein Length": "262.3", "Coding Ratio (%)": "55.7", "Number of rRNAs": "0", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pelagibius marinus", "strain": "strain=NBU2595", "accession": "GCA_014925385.1", "taxid": 2762760, "species_taxid": 2762760, "relation_to_type": "type", "validated": true, "ani": 77.6987, "matched_fragments": 179, "total_fragments": 515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=USBA 355", "accession": "GCA_900177295.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 77.2797, "matched_fragments": 238, 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"below_threshold" }, { "organism_name": "Pelagibius litoralis", "strain": "strain=DSM 21314", "accession": "GCA_011683915.1", "taxid": 374515, "species_taxid": 374515, "relation_to_type": "type", "validated": true, "ani": 76.7105, "matched_fragments": 107, "total_fragments": 515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hypericibacter adhaerens", "strain": "strain=R5959", "accession": "GCA_008728835.1", "taxid": 2602016, "species_taxid": 2602016, "relation_to_type": "type", "validated": true, "ani": 76.6888, "matched_fragments": 116, "total_fragments": 515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospirillum parvum", "strain": "strain=930I", "accession": "GCA_900100455.1", "taxid": 83401, "species_taxid": 83401, "relation_to_type": "type", "validated": true, "ani": 76.5062, "matched_fragments": 97, "total_fragments": 515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nisaea acidiphila", "strain": "strain=MEBiC11861", "accession": "GCA_024662015.1", "taxid": 1862145, "species_taxid": 1862145, "relation_to_type": "type", "validated": true, "ani": 76.4435, "matched_fragments": 67, "total_fragments": 515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimonas halophila", "strain": "strain=DSM 25584", "accession": "GCA_900100655.1", "taxid": 1082479, "species_taxid": 1082479, "relation_to_type": "type", "validated": true, "ani": 76.3399, "matched_fragments": 89, "total_fragments": 515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum thermophilum", "strain": "strain=CFH 70021", "accession": "GCA_003130795.1", "taxid": 2202148, "species_taxid": 2202148, "relation_to_type": "type", "validated": true, "ani": 76.2808, "matched_fragments": 117, "total_fragments": 515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum soli", "strain": "strain=CC-LY788", "accession": "GCA_017876165.1", "taxid": 1304799, "species_taxid": 1304799, "relation_to_type": "type", "validated": true, "ani": 76.2385, "matched_fragments": 110, "total_fragments": 515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibaculum pallidiluteum", "strain": "strain=SYSU D00532", "accession": "GCA_017355985.1", "taxid": 2812559, "species_taxid": 2812559, "relation_to_type": "type", "validated": true, "ani": 76.223, "matched_fragments": 117, "total_fragments": 515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Reyranella aquatilis", "strain": "strain=KCTC 52223", "accession": "GCA_020880995.1", "taxid": 2035356, "species_taxid": 2035356, "relation_to_type": "type", "validated": true, "ani": 76.1922, "matched_fragments": 89, "total_fragments": 515, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hypericibacter terrae", "strain": "strain=R5913", "accession": "GCA_008728855.1", "taxid": 2602015, "species_taxid": 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