{ "type": "genome", "identifier": "GCA_022565295.1", "organism": "Wenzhouxiangella sp.", "title": "Wenzhouxiangella sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Calgary", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022565295.1", "bioproject": "PRJNA377096", "biosample": "SAMN21419692", "wgs_master": "JAIUMZ000000000.1", "refseq_category": "na", "taxid": "1979961", "species_taxid": "1979961", "organism_name": "Wenzhouxiangella sp.", "infraspecific_name": "", "isolate": "PBR18_bin57", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/14", "asm_name": "ASM2256529v1", "submitter": "University of Calgary", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/565/295/GCA_022565295.1_ASM2256529v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-14", "dateModified": "2022-03-14", "datePublished": "2022-03-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Wenzhouxiangella sp." ], "sample_taxid": [ "1979961" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Calgary" ], "sample_host_location_id": [], "data_size": "1.071 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.07, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3809205", "Number of Sequences": "509", "Longest Sequences (bp)": "61834", "N50 (bp)": "8981", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.9", "Number of CDSs": "2948", "Average Protein Length": "326.5", "Coding Ratio (%)": "75.8", "Number of rRNAs": "1", "Number of tRNAs": "28", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Wenzhouxiangella marina", "strain": "strain=DSM 103414", "accession": "GCA_014203035.1", "taxid": 1579979, "species_taxid": 1579979, "relation_to_type": "type", "validated": true, "ani": 78.1309, "matched_fragments": 277, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenzhouxiangella marina", "strain": "strain=KCTC 42284", "accession": "GCA_001187785.1", "taxid": 1579979, "species_taxid": 1579979, "relation_to_type": "type", "validated": true, "ani": 78.058, "matched_fragments": 278, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenzhouxiangella sediminis", "strain": "strain=XDB06", "accession": "GCA_003410055.1", "taxid": 1792836, "species_taxid": 1792836, "relation_to_type": "type", "validated": true, "ani": 77.6376, "matched_fragments": 221, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas caeni", "strain": "strain=z29", "accession": "GCA_003024235.1", "taxid": 2058085, "species_taxid": 2058085, "relation_to_type": "type", "validated": true, "ani": 75.9658, "matched_fragments": 91, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas malthae", "strain": "strain=CC-JY-1", "accession": "GCA_000747075.1", "taxid": 354197, "species_taxid": 354197, "relation_to_type": "type", "validated": true, "ani": 75.9563, "matched_fragments": 95, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tahibacter caeni", "strain": "strain=BUT-6", "accession": "GCA_024609805.1", "taxid": 1453545, "species_taxid": 1453545, "relation_to_type": "type", "validated": true, "ani": 75.9424, "matched_fragments": 72, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas acidaminiphila", "strain": "strain=DSM 13117", "accession": "GCA_024221815.1", "taxid": 128780, "species_taxid": 128780, "relation_to_type": "type", "validated": true, "ani": 75.8306, "matched_fragments": 83, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax marinus", "strain": "strain=R8-12", "accession": "GCA_025532125.1", "taxid": 1177169, "species_taxid": 1177169, "relation_to_type": "type", "validated": true, "ani": 75.7447, "matched_fragments": 54, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas nasturtii", "strain": "strain=WHRI 8853", "accession": "GCA_001660815.1", "taxid": 1843581, "species_taxid": 1843581, "relation_to_type": "type", "validated": true, "ani": 75.7342, "matched_fragments": 61, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 75.6727, "matched_fragments": 77, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella acidiphila", "strain": "strain=7MK23", "accession": "GCA_014863405.1", "taxid": 2775866, "species_taxid": 2775866, "relation_to_type": "type", "validated": true, "ani": 75.6655, "matched_fragments": 73, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter ciconiae", "strain": "strain=H21R20", "accession": "GCA_015209725.1", "taxid": 2781022, "species_taxid": 2781022, "relation_to_type": "type", "validated": true, "ani": 75.6462, "matched_fragments": 75, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 75.6431, "matched_fragments": 71, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halochromatium glycolicum", "strain": "strain=DSM 11080", "accession": "GCA_016584085.1", "taxid": 85075, "species_taxid": 85075, "relation_to_type": "type", "validated": true, "ani": 75.641, "matched_fragments": 52, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frateuria flava", "strain": "strain=MAH-13", "accession": "GCA_017837635.1", "taxid": 2821489, "species_taxid": 2821489, "relation_to_type": "type", "validated": true, "ani": 75.5909, "matched_fragments": 73, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 75.5314, "matched_fragments": 85, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella amyloliquefaciens", "strain": "strain=DHC06", "accession": "GCA_004296575.1", "taxid": 1770545, "species_taxid": 1770545, "relation_to_type": "type", "validated": true, "ani": 75.5272, "matched_fragments": 61, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas carbonaria", "strain": "strain=CIP 111764", "accession": "GCA_904061905.1", "taxid": 2762745, "species_taxid": 2762745, "relation_to_type": "type", "validated": true, "ani": 75.4408, "matched_fragments": 65, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella telluris", "strain": "strain=G9", "accession": "GCA_014297575.1", "taxid": 2763498, "species_taxid": 2763498, "relation_to_type": "type", "validated": true, "ani": 75.3983, "matched_fragments": 61, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonella koreensis", "strain": "strain=DS-123", "accession": "GCA_001632775.1", "taxid": 323415, "species_taxid": 323415, "relation_to_type": "type", "validated": true, "ani": 75.3977, "matched_fragments": 96, "total_fragments": 1026, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.07, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_007695005.1", "gtdb_species": "s__Wenzhouxiangella sp007695005", "ani": 99.2051, "matched_fragments": 761, "total_fragments": 1026, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Wenzhouxiangellaceae;g__Wenzhouxiangella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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