{ "type": "genome", "identifier": "GCA_022565355.1", "organism": "Idiomarina sp.", "title": "Idiomarina sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Calgary", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022565355.1", "bioproject": "PRJNA377096", "biosample": "SAMN21419687", "wgs_master": "JAIUMU000000000.1", "refseq_category": "na", "taxid": "1874361", "species_taxid": "1874361", "organism_name": "Idiomarina sp.", "infraspecific_name": "", "isolate": "PBR18_bin46", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/14", "asm_name": "ASM2256535v1", "submitter": "University of Calgary", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/565/355/GCA_022565355.1_ASM2256535v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-14", "dateModified": "2022-03-14", "datePublished": "2022-03-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Idiomarina sp." ], "sample_taxid": [ "1874361" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Calgary" ], "sample_host_location_id": [], "data_size": "0.772 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 67.05, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2718130", "Number of Sequences": "14", "Longest Sequences (bp)": "876885", "N50 (bp)": "576970", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.3", "Number of CDSs": "2403", "Average Protein Length": "343.6", "Coding Ratio (%)": "91.1", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aliidiomarina shirensis", "strain": "strain=AIS", "accession": "GCA_003987345.1", "taxid": 1048642, "species_taxid": 1048642, "relation_to_type": "type", "validated": true, "ani": 78.8126, "matched_fragments": 321, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina iranensis", "strain": "strain=GBPy7", "accession": "GCA_003987135.1", "taxid": 1434071, "species_taxid": 1434071, "relation_to_type": "type", "validated": true, "ani": 78.6344, "matched_fragments": 299, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina halalkaliphila", "strain": "strain=IM 1326", "accession": "GCA_007096385.1", "taxid": 2593535, "species_taxid": 2593535, "relation_to_type": "type", "validated": true, "ani": 77.8115, "matched_fragments": 161, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina haloalkalitolerans", "strain": "strain=AK5", "accession": "GCA_003987315.1", "taxid": 859059, "species_taxid": 859059, "relation_to_type": "type", "validated": true, "ani": 77.659, "matched_fragments": 174, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina indica", "strain": "strain=SW123", "accession": "GCA_015354615.1", "taxid": 2749147, "species_taxid": 2749147, "relation_to_type": "type", "validated": true, "ani": 77.5297, "matched_fragments": 158, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina maris", "strain": "strain=CF12-14", "accession": "GCA_003987335.1", "taxid": 531312, "species_taxid": 531312, "relation_to_type": "type", "validated": true, "ani": 76.6517, "matched_fragments": 82, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina mangrovi", "strain": "strain=ZQ330", "accession": "GCA_003999375.1", "taxid": 2487133, "species_taxid": 2487133, "relation_to_type": "type", "validated": true, "ani": 76.4517, "matched_fragments": 57, "total_fragments": 901, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 67.05, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003987345.1", "gtdb_species": "s__Aliidiomarina shirensis", "ani": 78.8126, "matched_fragments": 321, "total_fragments": 901, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Aliidiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.30", "min_intra_species_ani": "99.30", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000218785.1", "gtdb_species": "s__Aliidiomarina sp000218785", "ani": 78.7126, "matched_fragments": 336, "total_fragments": 901, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Aliidiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003987135.1", "gtdb_species": "s__Aliidiomarina iranensis", "ani": 78.6204, "matched_fragments": 300, "total_fragments": 901, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Aliidiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { 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"GCF_015354615.1", "gtdb_species": "s__Aliidiomarina sp015354615", "ani": 77.5428, "matched_fragments": 159, "total_fragments": 901, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Aliidiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001458075.1", "gtdb_species": "s__Aliidiomarina sp001458075", "ani": 77.3674, "matched_fragments": 70, "total_fragments": 901, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Aliidiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003987335.1", 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"g__Aliidiomarina", "s__Aliidiomarina sp022565355", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Enterobacterales", "Alteromonadaceae", "Aliidiomarina", "Aliidiomarina", "sp022565355" ], "_meo": [ { "id": "MEO_0000726", "label": "soda lake" }, { "id": "MEO_0000119", "label": "bioreactor" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }