{ "type": "genome", "identifier": "GCA_022565505.1", "organism": "Ectothiorhodospiraceae bacterium", "title": "Ectothiorhodospiraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Calgary", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022565505.1", "bioproject": "PRJNA377096", "biosample": "SAMN21419682", "wgs_master": "JAIUMP000000000.1", "refseq_category": "na", "taxid": "2026737", "species_taxid": "2026737", "organism_name": "Ectothiorhodospiraceae bacterium", "infraspecific_name": "", "isolate": "PBR18_bin35", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/14", "asm_name": "ASM2256550v1", "submitter": "University of Calgary", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/565/505/GCA_022565505.1_ASM2256550v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-14", "dateModified": "2022-03-14", "datePublished": "2022-03-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Ectothiorhodospiraceae bacterium" ], "sample_taxid": [ "2026737" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Calgary" ], "sample_host_location_id": [], "data_size": "1.291 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 90.62, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4583774", "Number of Sequences": "541", "Longest Sequences (bp)": "47530", "N50 (bp)": "11649", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.4", "Number of CDSs": "3931", "Average Protein Length": "303.0", "Coding Ratio (%)": "78.0", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aquisalimonas asiatica", "strain": "strain=CGMCC 1.6291", "accession": "GCA_900110585.1", "taxid": 406100, "species_taxid": 406100, "relation_to_type": "type", "validated": true, "ani": 77.9922, "matched_fragments": 293, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylonatrum kenyense", "strain": "strain=AMT 1", "accession": "GCA_023195885.1", "taxid": 455253, "species_taxid": 455253, "relation_to_type": "type", "validated": true, "ani": 77.6743, "matched_fragments": 191, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronocella acetinitrilica", "strain": "strain=ANL 6-2", "accession": "GCA_024170285.1", "taxid": 414046, "species_taxid": 414046, "relation_to_type": "type", "validated": true, "ani": 77.5892, "matched_fragments": 270, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio sulfidiphilus", "strain": "strain=HL-EbGR7", "accession": "GCA_000021985.1", "taxid": 1033854, "species_taxid": 1033854, "relation_to_type": "type", "validated": true, "ani": 76.824, "matched_fragments": 161, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio versutus", "strain": "strain=AL 2", "accession": "GCA_001999325.1", "taxid": 106634, "species_taxid": 106634, "relation_to_type": "type", "validated": true, "ani": 76.7782, "matched_fragments": 79, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio thiocyanoxidans", "strain": "strain=ARh2", "accession": "GCA_000385215.1", "taxid": 152475, "species_taxid": 152475, "relation_to_type": "type", "validated": true, "ani": 76.7298, "matched_fragments": 87, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 76.6908, "matched_fragments": 112, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio denitrificans", "strain": "strain=ALJD", "accession": "GCA_002000365.1", "taxid": 108003, "species_taxid": 108003, "relation_to_type": "type", "validated": true, "ani": 76.6206, "matched_fragments": 108, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurivermis fontis", "strain": "strain=JG42", "accession": "GCA_004001245.1", "taxid": 1972068, "species_taxid": 1972068, "relation_to_type": "type", "validated": true, "ani": 76.4761, "matched_fragments": 119, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorhodospira neutriphila", "strain": "strain=DSM 15116", "accession": "GCA_016584055.1", "taxid": 168379, "species_taxid": 168379, "relation_to_type": "type", "validated": true, "ani": 76.4256, "matched_fragments": 87, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ventosae", "strain": "strain=CECT 5797", "accession": "GCA_004363555.1", "taxid": 229007, "species_taxid": 229007, "relation_to_type": "type", "validated": true, "ani": 76.4147, "matched_fragments": 117, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aestuarii", "strain": "strain=Hb3", "accession": "GCA_001886615.1", "taxid": 1897729, "species_taxid": 1897729, "relation_to_type": "type", "validated": true, "ani": 76.3914, "matched_fragments": 121, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalbus denitrificans", "strain": "strain=DSM 26407", "accession": "GCA_003337735.1", "taxid": 547122, "species_taxid": 547122, "relation_to_type": "type", "validated": true, "ani": 76.3741, "matched_fragments": 127, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio halophilus", "strain": "strain=HL17", "accession": "GCA_001995255.1", "taxid": 252474, "species_taxid": 252474, "relation_to_type": "type", "validated": true, "ani": 76.3631, "matched_fragments": 96, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 76.3579, "matched_fragments": 115, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium purpuratum", "strain": "strain=984", "accession": "GCA_000224005.3", "taxid": 37487, "species_taxid": 37487, "relation_to_type": "type", "validated": true, "ani": 76.2833, "matched_fragments": 98, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium bheemlicum", "strain": "strain=DSM 18632", "accession": "GCA_012276755.1", "taxid": 365339, "species_taxid": 365339, "relation_to_type": "type", "validated": true, "ani": 76.2135, "matched_fragments": 76, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NBRC 14159", "accession": "GCA_000467105.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 76.1615, "matched_fragments": 107, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaligenes", "strain": "strain=NCTC10367", "accession": "GCA_900455475.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 76.1399, "matched_fragments": 112, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola peritrichatus", "strain": "strain=JCM 18795", "accession": "GCA_003206715.1", "taxid": 1267424, "species_taxid": 1267424, "relation_to_type": "type", "validated": true, "ani": 76.0166, "matched_fragments": 62, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiribacter curvatus", "strain": "strain=UAH-SP71", "accession": "GCA_000485905.1", "taxid": 1335757, "species_taxid": 1335757, "relation_to_type": "type", "validated": true, "ani": 75.9819, "matched_fragments": 51, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola 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"GCA_007125985.1", "gtdb_species": "s__LSCE01 sp007125985", "ani": 78.8889, "matched_fragments": 346, "total_fragments": 1244, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Aquisalimonadaceae;g__LSCE01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.32", "min_intra_species_ani": "99.28", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900110585.1", "gtdb_species": "s__Aquisalimonas asiatica", "ani": 77.9922, "matched_fragments": 293, "total_fragments": 1244, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Aquisalimonadaceae;g__Aquisalimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003565775.1", "gtdb_species": 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