{ "type": "genome", "identifier": "GCA_022565695.1", "organism": "Alcanivorax sp.", "title": "Alcanivorax sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Calgary", "publication": [ {} ], "properties": { "assembly_accession": "GCA_022565695.1", "bioproject": "PRJNA377096", "biosample": "SAMN21419671", "wgs_master": "JAIUME000000000.1", "refseq_category": "na", "taxid": "1872427", "species_taxid": "1872427", "organism_name": "Alcanivorax sp.", "infraspecific_name": "", "isolate": "PBR18_bin07", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/14", "asm_name": "ASM2256569v1", "submitter": "University of Calgary", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/022/565/695/GCA_022565695.1_ASM2256569v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-14", "dateModified": "2022-03-14", "datePublished": "2022-03-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Alcanivorax sp." ], "sample_taxid": [ "1872427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Calgary" ], "sample_host_location_id": [], "data_size": "0.992 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3528247", "Number of Sequences": "22", "Longest Sequences (bp)": "881876", "N50 (bp)": "277131", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.2", "Number of CDSs": "3197", "Average Protein Length": "332.3", "Coding Ratio (%)": "90.3", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alcanivorax limicola", "strain": "strain=JB21", "accession": "GCA_019931215.1", "taxid": 2874102, "species_taxid": 2874102, "relation_to_type": "type", "validated": true, "ani": 85.3733, "matched_fragments": 940, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax indicus", "strain": "strain=SW127", "accession": "GCA_003259185.1", "taxid": 2202653, "species_taxid": 2202653, "relation_to_type": "type", "validated": true, "ani": 80.647, "matched_fragments": 711, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax pacificus", "strain": "strain=W11-5", "accession": "GCA_000299335.2", "taxid": 1306787, "species_taxid": 1306787, "relation_to_type": "type", "validated": true, "ani": 79.1701, "matched_fragments": 491, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax venustensis", "strain": "strain=ISO4", "accession": "GCA_015356855.1", "taxid": 172371, "species_taxid": 172371, "relation_to_type": "type", "validated": true, "ani": 78.37, "matched_fragments": 298, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax marinus", "strain": "strain=R8-12", "accession": "GCA_025532125.1", "taxid": 1177169, "species_taxid": 1177169, "relation_to_type": "type", "validated": true, "ani": 78.2132, "matched_fragments": 288, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax hongdengensis", "strain": "strain=A-11-3", "accession": "GCA_000300995.1", "taxid": 519051, "species_taxid": 519051, "relation_to_type": "type", "validated": true, "ani": 78.1209, "matched_fragments": 313, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax profundimaris", "strain": "strain=ST75FaO-1", "accession": "GCA_015265435.1", "taxid": 2735259, "species_taxid": 2735259, "relation_to_type": "type", "validated": true, "ani": 78.0408, "matched_fragments": 321, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax jadensis", "strain": "strain=T9", "accession": "GCA_000756655.1", "taxid": 64988, "species_taxid": 64988, "relation_to_type": "type", "validated": true, "ani": 77.9435, "matched_fragments": 281, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax gelatiniphagus", "strain": "strain=MEBiC 08158", "accession": "GCA_005938655.1", "taxid": 1194167, "species_taxid": 1194167, "relation_to_type": "type", "validated": true, "ani": 77.9346, "matched_fragments": 312, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax balearicus", "strain": "strain=MACL04", "accession": "GCA_025532145.1", "taxid": 413232, "species_taxid": 413232, "relation_to_type": "type", "validated": true, "ani": 77.8303, "matched_fragments": 246, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax mobilis", "strain": "strain=MT13131", "accession": "GCA_002864685.1", "taxid": 2019569, "species_taxid": 2019569, "relation_to_type": "type", "validated": true, "ani": 77.8156, "matched_fragments": 259, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax profundi", "strain": "strain=MTEO17", "accession": "GCA_003597125.1", "taxid": 2338368, "species_taxid": 2338368, "relation_to_type": "type", "validated": true, "ani": 77.7397, "matched_fragments": 221, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=FDAARGOS_876", "accession": "GCA_016028635.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "suspected-type", "validated": true, "ani": 76.4253, "matched_fragments": 114, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium nitratireducens", "strain": "strain=CGMCC 1.7286", "accession": "GCA_014645375.1", "taxid": 518897, "species_taxid": 518897, "relation_to_type": "type", "validated": true, "ani": 76.2951, "matched_fragments": 122, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylonatrum kenyense", "strain": "strain=AMT 1", "accession": "GCA_023195885.1", "taxid": 455253, "species_taxid": 455253, "relation_to_type": "type", "validated": true, "ani": 75.7048, "matched_fragments": 70, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003259185.1", "gtdb_species": "s__Alcanivorax_A indicus", "ani": 80.6558, "matched_fragments": 710, "total_fragments": 1169, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013823245.1", "gtdb_species": "s__Alcanivorax_A sp013823245", "ani": 80.3631, "matched_fragments": 623, "total_fragments": 1169, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000299335.2", "gtdb_species": "s__Alcanivorax_A pacificus", "ani": 79.1795, "matched_fragments": 490, "total_fragments": 1169, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009846755.1", "gtdb_species": "s__Alcanivorax_A sp009846755", "ani": 79.0786, "matched_fragments": 457, "total_fragments": 1169, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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